Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   AB6911_RS16575 Genome accession   NZ_CP166481
Coordinates   3232396..3234705 (-) Length   769 a.a.
NCBI ID   WP_003327153.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3227396..3239705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS16535 (AB6911_16510) - 3227866..3228297 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  AB6911_RS16540 (AB6911_16515) - 3228297..3228638 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  AB6911_RS16545 (AB6911_16520) - 3228631..3230112 (+) 1482 WP_003327159.1 Na+/H+ antiporter subunit D -
  AB6911_RS16550 (AB6911_16525) - 3230118..3230594 (+) 477 WP_003327158.1 Na+/H+ antiporter subunit E -
  AB6911_RS16555 (AB6911_16530) - 3230594..3230878 (+) 285 WP_003327157.1 Na(+)/H(+) antiporter subunit F1 -
  AB6911_RS16560 (AB6911_16535) mnhG 3230862..3231236 (+) 375 WP_003327156.1 monovalent cation/H(+) antiporter subunit G -
  AB6911_RS16565 (AB6911_16540) - 3231275..3231655 (-) 381 WP_003327155.1 hotdog fold thioesterase -
  AB6911_RS16570 (AB6911_16545) comA 3231673..3232314 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  AB6911_RS16575 (AB6911_16550) comP 3232396..3234705 (-) 2310 WP_003327153.1 histidine kinase Regulator
  AB6911_RS16580 (AB6911_16555) comX 3234721..3234942 (-) 222 WP_003327152.1 competence pheromone ComX -
  AB6911_RS16585 (AB6911_16560) - 3234939..3235808 (-) 870 WP_003327151.1 polyprenyl synthetase family protein -
  AB6911_RS16590 (AB6911_16565) degQ 3235993..3236136 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  AB6911_RS16595 (AB6911_16570) - 3236596..3236955 (+) 360 WP_003327148.1 hypothetical protein -
  AB6911_RS16600 (AB6911_16575) - 3236974..3238206 (-) 1233 WP_003327147.1 EAL and HDOD domain-containing protein -

Sequence


Protein


Download         Length: 769 a.a.        Molecular weight: 89201.58 Da        Isoelectric Point: 8.5488

>NTDB_id=1034693 AB6911_RS16575 WP_003327153.1 3232396..3234705(-) (comP) [Bacillus atrophaeus strain globigii]
MYKNINVYKYLSLVIIILSFVYVIYLSYISVFNIFVGADVKINEQGKLEVTNVIDYTDEYYSGVKKGDIILEVNGKKGSD
VQLERGRLVNVESLTVERDNKSFRLQNVSLINEENLFMYLIPVISYSICLFCIFFVYRINKIRKSTSAYILILFLLFVSV
AYVSACGARRGEEVSTYLLVLTLVSCPILYIHFIYKYFTELGTKLFEKKILIIMYMLPLINLLLEDVLSNRLKSSAFLSN
LNLIPFFVLVLTVSILIHQGIRKIKQNEQKSILKVLAYTNILSFSPFIIFFIIPYVLFDTYVSPFSLAAFTLVIPFSLVY
QFMTNRLYNIDFVIGRLKYYGFLAITPTVIVVTIFNYIQKPKDNIYSVKLTIVIYLLMFAVFYFKEIIDFRFKLKRFTEK
FNYQDGIFKFTQIIKQASSVDQVLNHFKNTILEVLNIDNACVYDNSKGKITLLSKNNFKDIAYKNYEQYVQKFSGDIGKI
IEFKQGFIIKIGERGDRSFLVLCFSSYNTFKLTRDEIAWLQTLAFYTNVSLENVVKIEELMVHLEDLKQQESNPVWLKKL
MFAIEEKQRSDLARDLHDSVLQDLISLKRQCELFLADFKKEDPCKNEVQDKLVQMNQQMSDVILMTRETCHELRPQLLYD
LGLVKALSKLVAQQQESAPFHIRLNTGRFTASLDLDSQLNLYRIIQEFLSNAMKHSQAGEVLIMLISFQNKIVLHYEDDG
VGFDKEKLNEQSMSMGLSGIKERVRALDGHLRIDTSVGNGLRADIEMEL

Nucleotide


Download         Length: 2310 bp        

>NTDB_id=1034693 AB6911_RS16575 WP_003327153.1 3232396..3234705(-) (comP) [Bacillus atrophaeus strain globigii]
ATGTACAAAAATATTAACGTCTATAAATATTTGTCTTTAGTTATTATCATTTTAAGTTTTGTTTATGTGATCTATCTCTC
TTATATTTCTGTTTTTAACATCTTCGTAGGTGCGGATGTGAAGATTAATGAACAGGGGAAGTTAGAGGTCACCAATGTTA
TAGATTATACAGATGAATATTATTCAGGTGTAAAAAAGGGTGACATCATTCTTGAGGTGAATGGGAAAAAAGGAAGCGAT
GTTCAGTTAGAACGTGGAAGGTTGGTCAATGTAGAAAGTTTAACTGTTGAGAGAGATAATAAATCATTTCGTTTACAAAA
TGTAAGCCTAATAAATGAAGAAAATTTATTTATGTATCTCATTCCAGTAATATCTTATTCAATCTGTTTATTTTGTATAT
TTTTTGTTTACAGAATAAATAAAATAAGAAAATCAACTTCAGCTTATATTCTAATTTTATTTTTGTTATTTGTATCTGTA
GCGTATGTAAGTGCCTGCGGAGCTAGAAGAGGTGAAGAGGTTAGCACTTACCTGCTTGTCCTTACTTTAGTAAGTTGTCC
AATTTTATATATTCATTTTATATATAAATACTTTACAGAATTGGGAACTAAGTTATTCGAAAAGAAGATTTTAATCATTA
TGTATATGCTCCCGCTAATAAATCTTTTATTAGAAGATGTTCTGAGTAATAGATTAAAATCTTCGGCTTTTTTGTCTAAT
CTAAACTTGATTCCCTTCTTTGTCTTAGTTCTTACTGTATCTATTCTTATCCATCAAGGCATAAGAAAAATCAAACAAAA
TGAGCAAAAGTCGATTTTGAAGGTCCTTGCTTATACGAATATCCTATCTTTCAGTCCCTTTATTATCTTTTTTATTATTC
CATATGTATTGTTTGATACGTATGTTTCACCCTTTAGTTTAGCAGCTTTTACACTTGTTATACCTTTTTCTTTAGTATAT
CAATTTATGACCAATAGACTTTATAATATTGACTTTGTTATAGGAAGGCTTAAGTACTATGGTTTTTTAGCAATTACTCC
TACTGTTATTGTGGTTACCATATTTAATTATATTCAAAAACCAAAAGATAACATTTATTCAGTTAAACTAACAATTGTAA
TATACTTGCTTATGTTTGCTGTTTTTTACTTTAAAGAGATCATTGACTTTCGTTTCAAGTTAAAAAGATTTACGGAGAAA
TTTAATTATCAAGATGGAATTTTTAAATTTACTCAGATAATAAAACAAGCATCATCGGTAGACCAAGTGCTTAATCACTT
TAAAAATACAATCTTAGAAGTACTAAATATAGATAATGCTTGCGTATATGATAATTCTAAAGGGAAAATTACCCTTCTTA
GCAAGAACAACTTTAAAGATATAGCTTATAAAAATTATGAGCAATATGTGCAAAAGTTTTCAGGCGATATTGGGAAAATT
ATAGAGTTTAAACAAGGTTTTATTATTAAAATAGGTGAACGAGGTGACAGGTCATTTTTAGTACTCTGTTTCTCAAGTTA
TAATACCTTTAAATTAACAAGAGATGAAATTGCATGGCTTCAAACATTAGCGTTTTATACAAATGTTTCATTGGAAAACG
TAGTGAAGATTGAAGAATTGATGGTGCATCTTGAAGATTTAAAACAACAAGAATCCAACCCGGTATGGCTGAAAAAGCTG
ATGTTCGCCATCGAAGAAAAACAACGATCCGACCTGGCGCGTGACCTCCATGACTCCGTTCTTCAGGATTTGATCTCTTT
AAAACGGCAATGCGAGCTGTTTCTTGCTGATTTTAAGAAGGAAGATCCTTGTAAGAATGAGGTGCAGGACAAGCTGGTGC
AAATGAATCAGCAGATGTCTGATGTGATTTTGATGACGAGGGAGACGTGCCATGAATTGCGGCCGCAGCTCTTGTATGAT
TTGGGATTGGTAAAGGCGCTGTCAAAGCTTGTTGCGCAGCAGCAGGAAAGCGCGCCGTTTCATATTCGGCTGAATACGGG
AAGGTTTACGGCATCGCTCGATCTTGATTCTCAGCTGAATTTGTACCGGATTATTCAAGAGTTTTTATCAAATGCCATGA
AGCATTCCCAAGCCGGCGAGGTGCTGATTATGCTGATCAGTTTTCAAAATAAAATCGTTCTTCATTATGAGGATGACGGC
GTTGGCTTTGATAAGGAAAAATTGAATGAACAGTCGATGAGTATGGGGCTTTCGGGCATTAAAGAGCGGGTTCGTGCGTT
AGACGGGCACCTTCGGATTGATACAAGCGTAGGAAATGGATTGCGAGCAGATATTGAAATGGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

53.247

100

0.533


Multiple sequence alignment