Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DXE38_RS05895 Genome accession   NZ_LT992477
Coordinates   1171220..1171816 (-) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus isolate 22_LA_562     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1166220..1176816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE38_RS05890 - 1170943..1171020 (-) 78 WP_371089683.1 hypothetical protein -
  DXE38_RS05895 recR 1171220..1171816 (-) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  DXE38_RS05900 - 1171823..1172140 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  DXE38_RS05905 dnaX 1172230..1173927 (-) 1698 WP_001109049.1 DNA polymerase III subunit gamma/tau -
  DXE38_RS05910 - 1173996..1174520 (-) 525 WP_001167828.1 GNAT family N-acetyltransferase -
  DXE38_RS05915 - 1174659..1174760 (-) 102 WP_014936987.1 hypothetical protein -
  DXE38_RS05925 treR 1175161..1175889 (-) 729 WP_001118673.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=1034641 DXE38_RS05895 WP_000559156.1 1171220..1171816(-) (recR) [Staphylococcus aureus isolate 22_LA_562]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1034641 DXE38_RS05895 WP_000559156.1 1171220..1171816(-) (recR) [Staphylococcus aureus isolate 22_LA_562]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCCCCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAAGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475