Detailed information
Bioinformatically predicted
Overview
| Name | recF | Type | Machinery gene |
| Locus tag | STAB1101_RS08125 | Genome accession | NZ_CP007240 |
| Coordinates | 1676034..1677140 (+) | Length | 368 a.a. |
| NCBI ID | WP_014635799.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain 7F7 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1671034..1682140
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STAB1101_RS08105 (STAB1101_08105) | hasA | 1671712..1672971 (+) | 1260 | WP_038431685.1 | hyaluronan synthase HasA | - |
| STAB1101_RS08110 (STAB1101_08110) | hasB | 1673007..1674215 (+) | 1209 | WP_002992300.1 | UDP-glucose 6-dehydrogenase HasB | - |
| STAB1101_RS08115 (STAB1101_08115) | hasC | 1674397..1675311 (+) | 915 | WP_002982024.1 | UTP--glucose-1-phosphate uridylyltransferase HasC | - |
| STAB1101_RS08120 (STAB1101_08120) | yaaA | 1675619..1676032 (+) | 414 | WP_010922800.1 | S4 domain-containing protein YaaA | - |
| STAB1101_RS08125 (STAB1101_08125) | recF | 1676034..1677140 (+) | 1107 | WP_014635799.1 | DNA replication/repair protein RecF | Machinery gene |
| STAB1101_RS08130 (STAB1101_08130) | - | 1677197..1678060 (-) | 864 | WP_002992310.1 | GRP family sugar transporter | - |
| STAB1101_RS08135 (STAB1101_08135) | - | 1678385..1679602 (-) | 1218 | WP_001291561.1 | tyrosine-type recombinase/integrase | - |
| STAB1101_RS08140 (STAB1101_08140) | - | 1679684..1679887 (-) | 204 | WP_000814511.1 | excisionase | - |
| STAB1101_RS08985 | - | 1679871..1680122 (+) | 252 | WP_001845478.1 | hypothetical protein | - |
| STAB1101_RS08145 (STAB1101_08145) | - | 1680348..1680578 (-) | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| STAB1101_RS08150 (STAB1101_08150) | - | 1680575..1680997 (-) | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| STAB1101_RS08155 (STAB1101_08155) | - | 1681502..1681855 (+) | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| STAB1101_RS08670 (STAB1101_08160) | - | 1681915..1682082 (-) | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 41808.75 Da Isoelectric Point: 8.4064
>NTDB_id=103463 STAB1101_RS08125 WP_014635799.1 1676034..1677140(+) (recF) [Streptococcus pyogenes strain 7F7]
MWIKELELKHYRNYDHLLVSFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH
MWIKELELKHYRNYDHLLVSFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH
Nucleotide
Download Length: 1107 bp
>NTDB_id=103463 STAB1101_RS08125 WP_014635799.1 1676034..1677140(+) (recF) [Streptococcus pyogenes strain 7F7]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGTCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGTCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recF | Streptococcus pneumoniae R6 |
62.842 |
99.457 |
0.625 |
| recF | Bacillus subtilis subsp. subtilis str. 168 |
45.455 |
100 |
0.462 |