Detailed information NTG1034529

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB3094_RS06030
• Genome accession: NZ_CP166448
• Coordinates: 1362084..1363538 (-)
• Length: 484 a.a.
• NCBI ID: WP_181388249.1
• Uniprot ID: -
• Organism: Xanthomonas euvesicatoria strain XTN47
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1360710..1361824	1362084..1363538	flank	260

Gene organization within MGE regions

Location: 1360710..1363538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3094_RS06025 (AB3094_06020)	-	1360710..1361824 (+)	1115	WP_317719000.1	IS3 family transposase	-
AB3094_RS06030 (AB3094_06025)	pilR	1362084..1363538 (-)	1455	WP_181388249.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 484 a.a.
• Molecular weight: 52522.28 Da
• Isoelectric Point: 6.8289

>NTDB_id=1034529 AB3094_RS06030 WP_181388249.1 1362084..1363538(-) (pilR) [Xanthomonas euvesicatoria strain XTN47]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEQREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide

• Length: 1455 bp

>NTDB_id=1034529 AB3094_RS06030 WP_181388249.1 1362084..1363538(-) (pilR) [Xanthomonas euvesicatoria strain XTN47]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACACCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTAGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCCAACGGAGGTGCCGCGGCCGAACAGCGCGAAGCCGT
CGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (162-327)

• Bacterial regulatory protein, Fis family (HTH_8) (441-481)

• Response regulator receiver domain (Response_reg) (28-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	95.661	0.603
pilR	Acinetobacter baumannii strain A118	49.138	95.868	0.471