Detailed information NTG1034517

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9X59_RS21540
• Genome accession: NZ_CP166444
• Coordinates: 4442798..4443598 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 2024CK-00645
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4437798..4448598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9X59_RS21505 (AB9X59_21505)	gspH	4437954..4438469 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
AB9X59_RS21510 (AB9X59_21510)	gspI	4438466..4438831 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB9X59_RS21515 (AB9X59_21515)	gspJ	4438828..4439424 (+)	597	WP_110231096.1	type II secretion system minor pseudopilin GspJ	-
AB9X59_RS21520 (AB9X59_21520)	gspK	4439421..4440407 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
AB9X59_RS21525 (AB9X59_21525)	gspL	4440394..4441587 (+)	1194	WP_110231097.1	type II secretion system protein GspL	-
AB9X59_RS21530 (AB9X59_21530)	-	4441580..4442065 (+)	486	WP_004145896.1	type II secretion system protein M	-
AB9X59_RS21535 (AB9X59_21535)	-	4442055..4442801 (+)	747	WP_004145897.1	type II secretion system protein N	-
AB9X59_RS21540 (AB9X59_21540)	pilD	4442798..4443598 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
AB9X59_RS21545 (AB9X59_21545)	hrpB	4443646..4446075 (-)	2430	WP_110231098.1	ATP-dependent helicase HrpB	-
AB9X59_RS21550 (AB9X59_21550)	thpR	4446148..4446684 (+)	537	WP_048291246.1	RNA 2',3'-cyclic phosphodiesterase	-
AB9X59_RS21555 (AB9X59_21555)	sfsA	4446684..4447400 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB9X59_RS21560 (AB9X59_21560)	dksA	4447563..4448018 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1034517 AB9X59_RS21540 WP_002888947.1 4442798..4443598(+) (pilD) [Klebsiella pneumoniae strain 2024CK-00645]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1034517 AB9X59_RS21540 WP_002888947.1 4442798..4443598(+) (pilD) [Klebsiella pneumoniae strain 2024CK-00645]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425