Detailed information NTG1034249

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9K82_RS01825
• Genome accession: NZ_CP166329
• Coordinates: 366384..367184 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRE378
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 361384..372184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9K82_RS01790 (AB9K82_01790)	gspH	361540..362055 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
AB9K82_RS01795 (AB9K82_01795)	gspI	362052..362417 (+)	366	WP_146720552.1	type II secretion system minor pseudopilin GspI	-
AB9K82_RS01800 (AB9K82_01800)	gspJ	362414..363010 (+)	597	WP_146720551.1	type II secretion system minor pseudopilin GspJ	-
AB9K82_RS01805 (AB9K82_01805)	gspK	363007..363993 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
AB9K82_RS01810 (AB9K82_01810)	gspL	363980..365173 (+)	1194	WP_146720550.1	type II secretion system protein GspL	-
AB9K82_RS01815 (AB9K82_01815)	-	365166..365651 (+)	486	WP_004151943.1	type II secretion system protein M	-
AB9K82_RS01820 (AB9K82_01820)	-	365641..366387 (+)	747	WP_146720549.1	type II secretion system protein N	-
AB9K82_RS01825 (AB9K82_01825)	pilD	366384..367184 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
AB9K82_RS01830 (AB9K82_01830)	hrpB	367232..369661 (-)	2430	WP_146720548.1	ATP-dependent helicase HrpB	-
AB9K82_RS01835 (AB9K82_01835)	thpR	369734..370270 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AB9K82_RS01840 (AB9K82_01840)	sfsA	370270..370986 (+)	717	WP_146720547.1	DNA/RNA nuclease SfsA	-
AB9K82_RS01845 (AB9K82_01845)	dksA	371149..371604 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1034249 AB9K82_RS01825 WP_002888947.1 366384..367184(+) (pilD) [Klebsiella pneumoniae strain CRE378]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1034249 AB9K82_RS01825 WP_002888947.1 366384..367184(+) (pilD) [Klebsiella pneumoniae strain CRE378]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGTGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425