Detailed information NTG1034183

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9K62_RS07035
• Genome accession: NZ_CP166315
• Coordinates: 1133674..1134474 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRE301
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1128674..1139474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9K62_RS07015 (AB9K62_07020)	dksA	1129254..1129709 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
AB9K62_RS07020 (AB9K62_07025)	sfsA	1129872..1130588 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB9K62_RS07025 (AB9K62_07030)	thpR	1130588..1131124 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AB9K62_RS07030 (AB9K62_07035)	hrpB	1131197..1133626 (+)	2430	WP_004222692.1	ATP-dependent helicase HrpB	-
AB9K62_RS07035 (AB9K62_07040)	pilD	1133674..1134474 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AB9K62_RS07040 (AB9K62_07045)	-	1134471..1135217 (-)	747	WP_009309263.1	type II secretion system protein N	-
AB9K62_RS07045 (AB9K62_07050)	-	1135207..1135692 (-)	486	WP_004145896.1	type II secretion system protein M	-
AB9K62_RS07050 (AB9K62_07055)	gspL	1135685..1136878 (-)	1194	WP_025985182.1	type II secretion system protein GspL	-
AB9K62_RS07055 (AB9K62_07060)	gspK	1136865..1137851 (-)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
AB9K62_RS07060 (AB9K62_07065)	gspJ	1137848..1138444 (-)	597	WP_023279845.1	type II secretion system minor pseudopilin GspJ	-
AB9K62_RS07065 (AB9K62_07070)	gspI	1138441..1138806 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB9K62_RS07070 (AB9K62_07075)	gspH	1138803..1139318 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1034183 AB9K62_RS07035 WP_004145898.1 1133674..1134474(-) (pilD) [Klebsiella pneumoniae strain CRE301]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1034183 AB9K62_RS07035 WP_004145898.1 1133674..1134474(-) (pilD) [Klebsiella pneumoniae strain CRE301]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGGCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425