Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DXE36_RS11880 Genome accession   NZ_LT992469
Coordinates   2293517..2294629 (-) Length   370 a.a.
NCBI ID   WP_000775118.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 15_LA_305     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2288517..2299629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE36_RS11870 gyrA 2288867..2291536 (-) 2670 WP_000819085.1 DNA gyrase subunit A -
  DXE36_RS11875 gyrB 2291573..2293507 (-) 1935 WP_000255581.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DXE36_RS11880 recF 2293517..2294629 (-) 1113 WP_000775118.1 DNA replication/repair protein RecF Machinery gene
  DXE36_RS11885 yaaA 2294626..2294871 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  DXE36_RS11890 dnaN 2295252..2296385 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  DXE36_RS11895 dnaA 2296663..2298024 (-) 1362 WP_001290435.1 chromosomal replication initiator protein DnaA -
  DXE36_RS11900 rpmH 2298755..2298892 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  DXE36_RS11905 rnpA 2299013..2299366 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42459.48 Da        Isoelectric Point: 6.4362

>NTDB_id=1033965 DXE36_RS11880 WP_000775118.1 2293517..2294629(-) (recF) [Staphylococcus aureus isolate 15_LA_305]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKETLSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSIDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1033965 DXE36_RS11880 WP_000775118.1 2293517..2294629(-) (recF) [Staphylococcus aureus isolate 15_LA_305]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAACGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCTATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTAT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.33

100

0.497

Multiple sequence alignment