Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SD311_RS04440 Genome accession   NZ_CP166245
Coordinates   955974..956537 (+) Length   187 a.a.
NCBI ID   WP_017722273.1    Uniprot ID   A0A2T4PJ80
Organism   Staphylococcus sp. KG4-3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 950974..961537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD311_RS04415 (SD311_004415) - 951846..953354 (+) 1509 WP_017722277.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  SD311_RS04420 (SD311_004420) - 953424..954026 (-) 603 WP_017722276.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SD311_RS04425 (SD311_004425) - 954032..954217 (-) 186 WP_002483735.1 DUF2187 family protein -
  SD311_RS04430 (SD311_004430) - 954417..955403 (+) 987 WP_119604106.1 lipoate--protein ligase -
  SD311_RS04435 (SD311_004435) - 955503..955721 (-) 219 WP_017722274.1 IDEAL domain-containing protein -
  SD311_RS04440 (SD311_004440) comK/comK1 955974..956537 (+) 564 WP_017722273.1 competence protein ComK Regulator
  SD311_RS04455 (SD311_004455) - 957859..957996 (+) 138 WP_017724088.1 beta-class phenol-soluble modulin -
  SD311_RS04460 (SD311_004460) - 958137..958319 (+) 183 WP_017724089.1 CsbD family protein -
  SD311_RS04465 (SD311_004465) - 959505..959717 (-) 213 WP_017724091.1 TM2 domain-containing protein -
  SD311_RS04470 (SD311_004470) - 959898..960467 (+) 570 WP_107551847.1 GNAT family N-acetyltransferase -
  SD311_RS04475 (SD311_004475) - 960544..961482 (-) 939 WP_017724093.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21879.23 Da        Isoelectric Point: 9.5361

>NTDB_id=1033947 SD311_RS04440 WP_017722273.1 955974..956537(+) (comK/comK1) [Staphylococcus sp. KG4-3]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1033947 SD311_RS04440 WP_017722273.1 955974..956537(+) (comK/comK1) [Staphylococcus sp. KG4-3]
ATGATTCAACCCTATATTATTAAAAAAGGTGATATGGTTTTACAACCATGTAATTTAGCTACTGGACAATATGAAGGTAG
TTACTTGTTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGTGTGTCTAAAATTATCGACCGTTCTTGTAGATTTT
ATGGTAGCAGTTATGTATTTAAAAAGGAAGATACTATGCGTATTACCGGCATAAGTAGCAAACCACCCATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGACAATACCTGGATTAATATCCATTACGTACA
TAATATTAGACCGCTAAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAATATTTCTGCTC
ATAGTATGCATCACCAATATTTAAATGGTATATATTATTATTACATGATGGATAGGGCGGCTAGAGTTGCTACATTTGAT
CCTGATTCGCCTATTGATTATACTAAACCACAATTAAATATATATGAAGCATTGGCAAAATATTCGTTATTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4PJ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.738

97.861

0.545
  comK/comK1 Staphylococcus aureus N315

55.738

97.861

0.545

Multiple sequence alignment