Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AB9D58_RS23245 | Genome accession | NZ_CP166239 |
| Coordinates | 4916083..4916880 (+) | Length | 265 a.a. |
| NCBI ID | WP_014227970.1 | Uniprot ID | A0A0H3H8P5 |
| Organism | Klebsiella michiganensis strain 2023CK-00457 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4911083..4921880
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9D58_RS23210 (AB9D58_23205) | gspH | 4911224..4911736 (+) | 513 | WP_025107367.1 | type II secretion system minor pseudopilin GspH | - |
| AB9D58_RS23215 (AB9D58_23210) | gspI | 4911733..4912098 (+) | 366 | WP_009654631.1 | type II secretion system minor pseudopilin GspI | - |
| AB9D58_RS23220 (AB9D58_23215) | gspJ | 4912095..4912691 (+) | 597 | WP_047724421.1 | type II secretion system minor pseudopilin GspJ | - |
| AB9D58_RS23225 (AB9D58_23220) | gspK | 4912688..4913668 (+) | 981 | WP_049083163.1 | type II secretion system minor pseudopilin GspK | - |
| AB9D58_RS23230 (AB9D58_23225) | gspL | 4913661..4914854 (+) | 1194 | WP_316533862.1 | type II secretion system protein GspL | - |
| AB9D58_RS23235 (AB9D58_23230) | - | 4914847..4915332 (+) | 486 | WP_316533863.1 | type II secretion system protein M | - |
| AB9D58_RS23240 (AB9D58_23235) | - | 4915322..4916080 (+) | 759 | WP_370443391.1 | type II secretion system protein N | - |
| AB9D58_RS23245 (AB9D58_23240) | pilD | 4916083..4916880 (+) | 798 | WP_014227970.1 | A24 family peptidase | Machinery gene |
| AB9D58_RS23250 (AB9D58_23245) | hrpB | 4917153..4919582 (-) | 2430 | WP_265810611.1 | ATP-dependent helicase HrpB | - |
| AB9D58_RS23255 (AB9D58_23250) | thpR | 4919655..4920191 (+) | 537 | WP_014837425.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| AB9D58_RS23260 (AB9D58_23255) | sfsA | 4920191..4920907 (+) | 717 | WP_004098690.1 | DNA/RNA nuclease SfsA | - |
| AB9D58_RS23265 (AB9D58_23260) | dksA | 4921072..4921527 (+) | 456 | WP_004098689.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 265 a.a. Molecular weight: 29166.77 Da Isoelectric Point: 8.3358
>NTDB_id=1033928 AB9D58_RS23245 WP_014227970.1 4916083..4916880(+) (pilD) [Klebsiella michiganensis strain 2023CK-00457]
MENIALLPEFAAQYPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISRRYPLMELTTGALFVLAGYLMAPGMPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV
MENIALLPEFAAQYPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISRRYPLMELTTGALFVLAGYLMAPGMPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV
Nucleotide
Download Length: 798 bp
>NTDB_id=1033928 AB9D58_RS23245 WP_014227970.1 4916083..4916880(+) (pilD) [Klebsiella michiganensis strain 2023CK-00457]
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATACCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTGAATCTCTGCC
TCCCCGCGTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGCGCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGACGACCGGCGCGCTGTTTGT
ACTCGCGGGGTACCTGATGGCTCCGGGCATGCCGCTGCTGGGCGGGCTAATTTTCGTGTCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGT
TCACTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATACCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTGAATCTCTGCC
TCCCCGCGTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGCGCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGACGACCGGCGCGCTGTTTGT
ACTCGCGGGGTACCTGATGGCTCCGGGCATGCCGCTGCTGGGCGGGCTAATTTTCGTGTCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGT
TCACTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
48.708 |
100 |
0.498 |
| pilD | Neisseria gonorrhoeae MS11 |
44.604 |
100 |
0.468 |
| pilD | Vibrio campbellii strain DS40M4 |
43.636 |
100 |
0.453 |
| pilD | Acinetobacter nosocomialis M2 |
44.788 |
97.736 |
0.438 |
| pilD | Acinetobacter baumannii D1279779 |
44.402 |
97.736 |
0.434 |