Detailed information NTG1033882

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9Q24_RS20870
• Genome accession: NZ_CP166227
• Coordinates: 4270921..4271721 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain hvKP 287
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4265921..4276721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9Q24_RS20835 (AB9Q24_20820)	gspH	4266077..4266592 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
AB9Q24_RS20840 (AB9Q24_20825)	gspI	4266589..4266954 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB9Q24_RS20845 (AB9Q24_20830)	gspJ	4266951..4267547 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
AB9Q24_RS20850 (AB9Q24_20835)	gspK	4267544..4268530 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
AB9Q24_RS20855 (AB9Q24_20840)	gspL	4268517..4269710 (+)	1194	WP_019704440.1	type II secretion system protein GspL	-
AB9Q24_RS20860 (AB9Q24_20845)	-	4269703..4270188 (+)	486	WP_023312675.1	type II secretion system protein M	-
AB9Q24_RS20865 (AB9Q24_20850)	-	4270178..4270924 (+)	747	WP_004145897.1	type II secretion system protein N	-
AB9Q24_RS20870 (AB9Q24_20855)	pilD	4270921..4271721 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
AB9Q24_RS20875 (AB9Q24_20860)	hrpB	4271769..4274198 (-)	2430	WP_065808762.1	ATP-dependent helicase HrpB	-
AB9Q24_RS20880 (AB9Q24_20865)	thpR	4274271..4274807 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AB9Q24_RS20885 (AB9Q24_20870)	sfsA	4274807..4275523 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB9Q24_RS20890 (AB9Q24_20875)	dksA	4275686..4276141 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1033882 AB9Q24_RS20870 WP_002888947.1 4270921..4271721(+) (pilD) [Klebsiella pneumoniae strain hvKP 287]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1033882 AB9Q24_RS20870 WP_002888947.1 4270921..4271721(+) (pilD) [Klebsiella pneumoniae strain hvKP 287]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425