Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AB9C21_RS23415 | Genome accession | NZ_CP166222 |
| Coordinates | 4918007..4918804 (+) | Length | 265 a.a. |
| NCBI ID | WP_032694399.1 | Uniprot ID | A0A2J5PD60 |
| Organism | Klebsiella michiganensis strain 2022CK-00479 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4913007..4923804
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9C21_RS23380 (AB9C21_23375) | gspH | 4913154..4913660 (+) | 507 | WP_032694394.1 | type II secretion system minor pseudopilin GspH | - |
| AB9C21_RS23385 (AB9C21_23380) | gspI | 4913657..4914022 (+) | 366 | WP_009654631.1 | type II secretion system minor pseudopilin GspI | - |
| AB9C21_RS23390 (AB9C21_23385) | gspJ | 4914019..4914615 (+) | 597 | WP_032694395.1 | type II secretion system minor pseudopilin GspJ | - |
| AB9C21_RS23395 (AB9C21_23390) | gspK | 4914612..4915592 (+) | 981 | WP_014227974.1 | type II secretion system minor pseudopilin GspK | - |
| AB9C21_RS23400 (AB9C21_23395) | gspL | 4915585..4916778 (+) | 1194 | WP_032694396.1 | type II secretion system protein GspL | - |
| AB9C21_RS23405 (AB9C21_23400) | gspM | 4916771..4917256 (+) | 486 | WP_032694397.1 | type II secretion system protein GspM | - |
| AB9C21_RS23410 (AB9C21_23405) | - | 4917246..4918004 (+) | 759 | WP_032694398.1 | type II secretion system protein N | - |
| AB9C21_RS23415 (AB9C21_23410) | pilD | 4918007..4918804 (+) | 798 | WP_032694399.1 | A24 family peptidase | Machinery gene |
| AB9C21_RS23420 (AB9C21_23415) | hrpB | 4918902..4921331 (-) | 2430 | WP_064388485.1 | ATP-dependent helicase HrpB | - |
| AB9C21_RS23425 (AB9C21_23420) | thpR | 4921404..4921940 (+) | 537 | WP_032694401.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| AB9C21_RS23430 (AB9C21_23425) | sfsA | 4921940..4922656 (+) | 717 | WP_014227967.1 | DNA/RNA nuclease SfsA | - |
| AB9C21_RS23435 (AB9C21_23430) | dksA | 4922821..4923276 (+) | 456 | WP_004098689.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 265 a.a. Molecular weight: 29150.77 Da Isoelectric Point: 8.3410
>NTDB_id=1033814 AB9C21_RS23415 WP_032694399.1 4918007..4918804(+) (pilD) [Klebsiella michiganensis strain 2022CK-00479]
MENIALLPEFAAQFPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISRRYPLMELTTGALFVLAGYLMAPGMPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV
MENIALLPEFAAQFPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISRRYPLMELTTGALFVLAGYLMAPGMPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV
Nucleotide
Download Length: 798 bp
>NTDB_id=1033814 AB9C21_RS23415 WP_032694399.1 4918007..4918804(+) (pilD) [Klebsiella michiganensis strain 2022CK-00479]
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATTCCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTAAATCTCTGCC
TCCCCGCCTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGCGCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGACGACCGGCGCGCTGTTTGT
ACTCGCGGGGTACCTGATGGCTCCGGGCATGCCGCTGCTGGGCGGGCTAATTTTCGTGTCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCAGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGTCTGGTAACCCGTCGT
TCGCTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATTCCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTAAATCTCTGCC
TCCCCGCCTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGCGCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGACGACCGGCGCGCTGTTTGT
ACTCGCGGGGTACCTGATGGCTCCGGGCATGCCGCTGCTGGGCGGGCTAATTTTCGTGTCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCAGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGTCTGGTAACCCGTCGT
TCGCTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.808 |
98.491 |
0.491 |
| pilD | Neisseria gonorrhoeae MS11 |
44.604 |
100 |
0.468 |
| pilD | Vibrio campbellii strain DS40M4 |
43.273 |
100 |
0.449 |
| pilD | Acinetobacter nosocomialis M2 |
44.788 |
97.736 |
0.438 |
| pilD | Acinetobacter baumannii D1279779 |
44.402 |
97.736 |
0.434 |