Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AB9C18_RS23935 | Genome accession | NZ_CP166218 |
| Coordinates | 5028303..5029100 (+) | Length | 265 a.a. |
| NCBI ID | WP_032694399.1 | Uniprot ID | A0A2J5PD60 |
| Organism | Klebsiella michiganensis strain 2022CK-00289 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 5023303..5034100
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9C18_RS23900 (AB9C18_23895) | gspH | 5023450..5023956 (+) | 507 | WP_032694394.1 | type II secretion system minor pseudopilin GspH | - |
| AB9C18_RS23905 (AB9C18_23900) | gspI | 5023953..5024318 (+) | 366 | WP_009654631.1 | type II secretion system minor pseudopilin GspI | - |
| AB9C18_RS23910 (AB9C18_23905) | gspJ | 5024315..5024911 (+) | 597 | WP_032694395.1 | type II secretion system minor pseudopilin GspJ | - |
| AB9C18_RS23915 (AB9C18_23910) | gspK | 5024908..5025888 (+) | 981 | WP_014227974.1 | type II secretion system minor pseudopilin GspK | - |
| AB9C18_RS23920 (AB9C18_23915) | gspL | 5025881..5027074 (+) | 1194 | WP_032694396.1 | type II secretion system protein GspL | - |
| AB9C18_RS23925 (AB9C18_23920) | gspM | 5027067..5027552 (+) | 486 | WP_032694397.1 | type II secretion system protein GspM | - |
| AB9C18_RS23930 (AB9C18_23925) | - | 5027542..5028300 (+) | 759 | WP_032694398.1 | type II secretion system protein N | - |
| AB9C18_RS23935 (AB9C18_23930) | pilD | 5028303..5029100 (+) | 798 | WP_032694399.1 | A24 family peptidase | Machinery gene |
| AB9C18_RS23940 (AB9C18_23935) | hrpB | 5029198..5031627 (-) | 2430 | WP_064388485.1 | ATP-dependent helicase HrpB | - |
| AB9C18_RS23945 (AB9C18_23940) | thpR | 5031700..5032236 (+) | 537 | WP_032694401.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| AB9C18_RS23950 (AB9C18_23945) | sfsA | 5032236..5032952 (+) | 717 | WP_014227967.1 | DNA/RNA nuclease SfsA | - |
| AB9C18_RS23955 (AB9C18_23950) | dksA | 5033117..5033572 (+) | 456 | WP_004098689.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 265 a.a. Molecular weight: 29150.77 Da Isoelectric Point: 8.3410
>NTDB_id=1033790 AB9C18_RS23935 WP_032694399.1 5028303..5029100(+) (pilD) [Klebsiella michiganensis strain 2022CK-00289]
MENIALLPEFAAQFPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISRRYPLMELTTGALFVLAGYLMAPGMPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV
MENIALLPEFAAQFPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISRRYPLMELTTGALFVLAGYLMAPGMPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV
Nucleotide
Download Length: 798 bp
>NTDB_id=1033790 AB9C18_RS23935 WP_032694399.1 5028303..5029100(+) (pilD) [Klebsiella michiganensis strain 2022CK-00289]
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATTCCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTAAATCTCTGCC
TCCCCGCCTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGCGCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGACGACCGGCGCGCTGTTTGT
ACTCGCGGGGTACCTGATGGCTCCGGGCATGCCGCTGCTGGGCGGGCTAATTTTCGTGTCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCAGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGTCTGGTAACCCGTCGT
TCGCTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATTCCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTAAATCTCTGCC
TCCCCGCCTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGCGCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGACGACCGGCGCGCTGTTTGT
ACTCGCGGGGTACCTGATGGCTCCGGGCATGCCGCTGCTGGGCGGGCTAATTTTCGTGTCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCAGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGTCTGGTAACCCGTCGT
TCGCTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.808 |
98.491 |
0.491 |
| pilD | Neisseria gonorrhoeae MS11 |
44.604 |
100 |
0.468 |
| pilD | Vibrio campbellii strain DS40M4 |
43.273 |
100 |
0.449 |
| pilD | Acinetobacter nosocomialis M2 |
44.788 |
97.736 |
0.438 |
| pilD | Acinetobacter baumannii D1279779 |
44.402 |
97.736 |
0.434 |