Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8P53_RS08005 Genome accession   NZ_CP166198
Coordinates   1560988..1561554 (-) Length   188 a.a.
NCBI ID   WP_011666823.1    Uniprot ID   M5ABA8
Organism   Levilactobacillus brevis strain BD-LB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1555988..1566554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8P53_RS07985 (AB8P53_07990) - 1556367..1557143 (-) 777 WP_338757716.1 D-alanyl-D-alanine carboxypeptidase -
  AB8P53_RS07990 (AB8P53_07995) - 1557752..1559359 (+) 1608 WP_338757717.1 peptide ABC transporter substrate-binding protein -
  AB8P53_RS07995 (AB8P53_08000) - 1559390..1560577 (+) 1188 WP_085768298.1 amidohydrolase family protein -
  AB8P53_RS08000 (AB8P53_08005) rpsR 1560723..1560959 (-) 237 WP_011666824.1 30S ribosomal protein S18 -
  AB8P53_RS08005 (AB8P53_08010) ssb 1560988..1561554 (-) 567 WP_011666823.1 single-stranded DNA-binding protein Machinery gene
  AB8P53_RS08010 (AB8P53_08015) rpsF 1561588..1561884 (-) 297 WP_011666822.1 30S ribosomal protein S6 -
  AB8P53_RS08015 (AB8P53_08020) gyrA 1562654..1565188 (-) 2535 WP_087716766.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20513.13 Da        Isoelectric Point: 4.7381

>NTDB_id=1033670 AB8P53_RS08005 WP_011666823.1 1560988..1561554(-) (ssb) [Levilactobacillus brevis strain BD-LB]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYTSGNPAPAAPSQGMAPNSGSNNQ
NSNANNNAADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1033670 AB8P53_RS08005 WP_011666823.1 1560988..1561554(-) (ssb) [Levilactobacillus brevis strain BD-LB]
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACACGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTACGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAATCCATACACGAGTGGGAATCCAGCTCCGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAGTAACAATCAG
AACAGTAATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGCGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5ABA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.702

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.574

Multiple sequence alignment