Detailed information    

insolico Bioinformatically predicted

Overview


Name   nucA/comI   Type   Machinery gene
Locus tag   QUE82_RS02000 Genome accession   NZ_AP028059
Coordinates   377869..378318 (-) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus subtilis subsp. natto strain NARUSE     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 372869..383318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE82_RS01960 - 373194..373391 (+) 198 WP_121509395.1 hypothetical protein -
  QUE82_RS01965 (BSNN_03540) yckC 373411..373866 (+) 456 WP_014478793.1 RDD family protein -
  QUE82_RS01970 (BSNN_03550) yckD 373948..374280 (+) 333 WP_014478794.1 YckD family protein -
  QUE82_RS01975 (BSNN_03560) - 374408..374830 (+) 423 WP_014478795.1 MarR family transcriptional regulator -
  QUE82_RS01980 (BSNN_03570) - 374818..375138 (+) 321 WP_014478796.1 DUF3147 family protein -
  QUE82_RS01985 (BSNN_03580) - 375157..375901 (+) 745 Protein_347 AAA family ATPase -
  QUE82_RS01990 (BSNN_03600) bglC 375974..377407 (+) 1434 WP_014478799.1 6-phospho-beta-glucosidase -
  QUE82_RS01995 (BSNN_03610) nin/comJ 377444..377842 (-) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  QUE82_RS02000 (BSNN_03620) nucA/comI 377869..378318 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  QUE82_RS02005 tlpC 378486..380207 (-) 1722 Protein_351 methyl-accepting chemotaxis protein TlpC -
  QUE82_RS02010 (BSNN_03650) hxlB 380318..380875 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  QUE82_RS02015 (BSNN_03660) hxlA 380881..381513 (-) 633 WP_014478804.1 3-hexulose-6-phosphate synthase -
  QUE82_RS02020 (BSNN_03670) hxlR 381742..382104 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence


Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=103367 QUE82_RS02000 WP_014475770.1 377869..378318(-) (nucA/comI) [Bacillus subtilis subsp. natto strain NARUSE]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=103367 QUE82_RS02000 WP_014475770.1 377869..378318(-) (nucA/comI) [Bacillus subtilis subsp. natto strain NARUSE]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987


Multiple sequence alignment