Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AB8599_RS18155 Genome accession   NZ_CP166195
Coordinates   598205..599389 (-) Length   394 a.a.
NCBI ID   WP_407334305.1    Uniprot ID   -
Organism   Enterovibrio sp. 27052020O     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 593205..604389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8599_RS18145 (AB8599_18150) cas6f 594172..594774 (+) 603 WP_407334303.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
  AB8599_RS18150 (AB8599_18155) - 596159..598150 (+) 1992 WP_407334304.1 response regulator -
  AB8599_RS18155 (AB8599_18160) cqsA 598205..599389 (-) 1185 WP_407334305.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AB8599_RS18160 (AB8599_18165) - 599755..600831 (-) 1077 WP_407334306.1 porin -
  AB8599_RS18165 (AB8599_18170) - 601281..603170 (-) 1890 WP_407334307.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 43332.44 Da        Isoelectric Point: 5.6316

>NTDB_id=1033656 AB8599_RS18155 WP_407334305.1 598205..599389(-) (cqsA) [Enterovibrio sp. 27052020O]
MENQSIIKKKLPSFVEARLNSFLRDMTEPYENRRPLPVSRRPGEGAVIMQSNDYLSLSLDKNIQKAHLDAIAASNENVVM
SAVFLQDADHKPDFENRLATFMGMDGCVLSQSGWAANIGLLQTICEPNTRVYIDFFAHMSLWEGARIAGAQIIPFIHNSV
SNLKRQIKKHGPGIILVDSVYSTIGTVAPLRAIYEVAQAFDCALVVDESHSLGTHGPDGSGLINEMEVRDQVDFVTTSLA
KAFAYRAGAVLGPKSLITALPFVSFPAIFSSTILPQEVARLDATLDVIRTGDAKRRRLFEISDVLRTGLQEIGFTIRSES
QIISLECGDEQNTEHVRDFLESNGVFGAVFCAPATAKNKAIIRFSLSAEMTSREVDHVLAVCQAAYENPSLSFY

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=1033656 AB8599_RS18155 WP_407334305.1 598205..599389(-) (cqsA) [Enterovibrio sp. 27052020O]
ATGGAAAATCAATCAATCATTAAAAAAAAACTCCCTTCTTTCGTCGAAGCACGTTTGAACTCATTTTTACGTGATATGAC
AGAGCCGTATGAAAATCGCCGGCCATTACCTGTCAGTCGTCGACCAGGAGAAGGGGCGGTGATCATGCAAAGTAATGACT
ACTTGTCATTGAGCCTAGATAAAAACATTCAGAAAGCCCATTTGGATGCCATCGCTGCGTCCAATGAAAATGTAGTGATG
TCAGCCGTTTTTCTTCAGGATGCAGACCACAAACCGGATTTTGAAAATCGCCTAGCGACGTTTATGGGGATGGATGGCTG
TGTACTGTCTCAATCAGGATGGGCGGCGAATATTGGCTTATTGCAAACCATCTGTGAACCGAACACTCGCGTCTATATTG
ATTTTTTCGCGCATATGTCTTTGTGGGAAGGTGCACGGATCGCGGGTGCTCAGATCATCCCATTTATCCATAACAGCGTG
TCTAATTTGAAGCGACAAATAAAAAAGCACGGGCCTGGCATCATATTGGTTGATTCGGTCTATAGCACTATTGGCACTGT
CGCACCGCTTCGCGCCATCTACGAAGTGGCTCAGGCGTTTGATTGTGCGCTGGTGGTCGATGAATCGCACTCGCTCGGAA
CGCATGGGCCAGACGGTTCAGGCTTAATTAATGAAATGGAAGTGCGTGACCAAGTGGATTTCGTCACGACCAGCCTTGCA
AAAGCGTTTGCTTACCGAGCAGGCGCAGTGCTCGGCCCAAAGAGTTTGATCACTGCGCTGCCCTTTGTGTCGTTTCCGGC
GATATTCAGTTCCACGATATTGCCACAGGAGGTAGCACGGCTTGATGCAACATTGGATGTGATACGAACAGGCGATGCAA
AGCGAAGGCGATTATTTGAGATCTCAGATGTACTTCGTACCGGTCTTCAGGAGATTGGCTTTACGATCCGCAGTGAATCA
CAAATCATTTCGCTGGAATGTGGTGATGAGCAAAACACGGAACACGTGAGGGATTTTCTGGAAAGCAACGGCGTTTTCGG
GGCGGTTTTCTGTGCTCCCGCGACGGCTAAGAATAAGGCGATTATCCGCTTTTCTTTGAGTGCTGAGATGACCTCTAGGG
AAGTCGATCATGTCCTGGCAGTCTGTCAGGCGGCTTATGAGAACCCGAGCCTCAGTTTCTATTGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(50-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

51.852

95.939

0.497

Multiple sequence alignment