Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB9G72_RS11540 Genome accession   NZ_CP166134
Coordinates   2478182..2478772 (-) Length   196 a.a.
NCBI ID   WP_005690377.1    Uniprot ID   A0A508YN23
Organism   Lacticaseibacillus rhamnosus strain NS2301G1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2473182..2483772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9G72_RS11510 (AB9G72_11505) - 2473516..2473941 (+) 426 WP_005690370.1 hypothetical protein -
  AB9G72_RS11515 (AB9G72_11510) - 2474020..2474214 (-) 195 WP_005685667.1 hypothetical protein -
  AB9G72_RS11520 (AB9G72_11515) cydB 2474254..2475273 (-) 1020 WP_005690372.1 cytochrome d ubiquinol oxidase subunit II -
  AB9G72_RS11525 (AB9G72_11520) - 2475266..2476744 (-) 1479 WP_012807318.1 cytochrome ubiquinol oxidase subunit I -
  AB9G72_RS11530 (AB9G72_11525) - 2477055..2477561 (+) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  AB9G72_RS11535 (AB9G72_11530) rpsR 2477854..2478090 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  AB9G72_RS11540 (AB9G72_11535) ssb 2478182..2478772 (-) 591 WP_005690377.1 single-stranded DNA-binding protein Machinery gene
  AB9G72_RS11545 (AB9G72_11540) rpsF 2478802..2479098 (-) 297 WP_005685677.1 30S ribosomal protein S6 -
  AB9G72_RS11550 (AB9G72_11545) ssb 2479225..2479656 (-) 432 WP_005690380.1 single-stranded DNA-binding protein -
  AB9G72_RS11555 (AB9G72_11550) - 2479766..2479852 (+) 87 Protein_2246 deoxyribose-phosphate aldolase -
  AB9G72_RS11560 (AB9G72_11555) - 2479980..2480492 (-) 513 WP_012807317.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  AB9G72_RS11565 (AB9G72_11560) - 2480587..2480817 (-) 231 WP_005690384.1 hypothetical protein -
  AB9G72_RS11570 (AB9G72_11565) - 2481194..2481292 (-) 99 Protein_2249 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20905.63 Da        Isoelectric Point: 4.9056

>NTDB_id=1033591 AB9G72_RS11540 WP_005690377.1 2478182..2478772(-) (ssb) [Lacticaseibacillus rhamnosus strain NS2301G1]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
SPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1033591 AB9G72_RS11540 WP_005690377.1 2478182..2478772(-) (ssb) [Lacticaseibacillus rhamnosus strain NS2301G1]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGAGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTTACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AGCCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A508YN23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.735

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5

Multiple sequence alignment