Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB9G72_RS07485 | Genome accession | NZ_CP166134 |
| Coordinates | 1639408..1639893 (-) | Length | 161 a.a. |
| NCBI ID | WP_015764328.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus rhamnosus strain NS2301G1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1608199..1649530 | 1639408..1639893 | within | 0 |
Gene organization within MGE regions
Location: 1608199..1649530
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9G72_RS07275 (AB9G72_07270) | - | 1608199..1609383 (-) | 1185 | WP_015764361.1 | GH25 family lysozyme | - |
| AB9G72_RS07280 (AB9G72_07275) | - | 1609394..1609807 (-) | 414 | WP_015764360.1 | phage holin | - |
| AB9G72_RS07285 (AB9G72_07280) | - | 1609797..1610090 (-) | 294 | WP_014569500.1 | hypothetical protein | - |
| AB9G72_RS07290 (AB9G72_07285) | - | 1610120..1610263 (-) | 144 | WP_015764359.1 | XkdX family protein | - |
| AB9G72_RS07295 (AB9G72_07290) | - | 1610244..1610531 (-) | 288 | WP_015764358.1 | hypothetical protein | - |
| AB9G72_RS07300 (AB9G72_07295) | - | 1610528..1613029 (-) | 2502 | WP_015764357.1 | phage tail protein | - |
| AB9G72_RS07305 (AB9G72_07300) | - | 1613029..1614951 (-) | 1923 | WP_015764356.1 | distal tail protein Dit | - |
| AB9G72_RS07310 (AB9G72_07305) | - | 1614952..1619817 (-) | 4866 | WP_015764355.1 | phage tail tape measure protein | - |
| AB9G72_RS07315 (AB9G72_07310) | gpG | 1619940..1620353 (-) | 414 | WP_003661382.1 | phage tail assembly chaperone G | - |
| AB9G72_RS07320 (AB9G72_07315) | - | 1620453..1621070 (-) | 618 | WP_015764354.1 | major tail protein | - |
| AB9G72_RS07325 (AB9G72_07320) | - | 1621104..1621490 (-) | 387 | WP_015764353.1 | hypothetical protein | - |
| AB9G72_RS07330 (AB9G72_07325) | - | 1621490..1621876 (-) | 387 | WP_015764352.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| AB9G72_RS07335 (AB9G72_07330) | - | 1621876..1622205 (-) | 330 | WP_041247957.1 | head-tail adaptor protein | - |
| AB9G72_RS07340 (AB9G72_07335) | - | 1622195..1622554 (-) | 360 | WP_015764350.1 | head-tail connector protein | - |
| AB9G72_RS07345 (AB9G72_07340) | - | 1622565..1622804 (-) | 240 | WP_005712764.1 | Ig-like domain-containing protein | - |
| AB9G72_RS07350 (AB9G72_07345) | - | 1622822..1624024 (-) | 1203 | WP_015764349.1 | phage major capsid protein | - |
| AB9G72_RS07355 (AB9G72_07350) | - | 1624066..1624695 (-) | 630 | WP_015764348.1 | HK97 family phage prohead protease | - |
| AB9G72_RS07360 (AB9G72_07355) | - | 1624649..1625902 (-) | 1254 | WP_015764347.1 | phage portal protein | - |
| AB9G72_RS07365 (AB9G72_07360) | - | 1625908..1626099 (-) | 192 | WP_003661399.1 | hypothetical protein | - |
| AB9G72_RS07370 (AB9G72_07365) | - | 1626111..1627823 (-) | 1713 | WP_015764346.1 | terminase large subunit | - |
| AB9G72_RS07375 (AB9G72_07370) | - | 1627845..1628300 (-) | 456 | WP_005686963.1 | P27 family phage terminase small subunit | - |
| AB9G72_RS07380 (AB9G72_07375) | - | 1628501..1629295 (-) | 795 | WP_015764345.1 | HNH endonuclease | - |
| AB9G72_RS07385 (AB9G72_07380) | - | 1629332..1629496 (-) | 165 | WP_015764344.1 | hypothetical protein | - |
| AB9G72_RS07390 | - | 1629514..1629837 (-) | 324 | WP_015764343.1 | hypothetical protein | - |
| AB9G72_RS07395 (AB9G72_07385) | - | 1629850..1629936 (-) | 87 | Protein_1454 | ribonucleoside-diphosphate reductase | - |
| AB9G72_RS07400 (AB9G72_07390) | - | 1629940..1630470 (-) | 531 | WP_015764342.1 | NUMOD4 domain-containing protein | - |
| AB9G72_RS07405 (AB9G72_07395) | - | 1630457..1631674 (-) | 1218 | WP_015764341.1 | GcrA family cell cycle regulator | - |
| AB9G72_RS07410 (AB9G72_07400) | - | 1632317..1632982 (-) | 666 | WP_015764340.1 | hypothetical protein | - |
| AB9G72_RS07420 (AB9G72_07410) | - | 1633447..1633875 (-) | 429 | WP_015992527.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| AB9G72_RS07425 (AB9G72_07415) | - | 1634308..1634700 (-) | 393 | WP_015764338.1 | YopX family protein | - |
| AB9G72_RS07430 (AB9G72_07420) | - | 1634697..1634936 (-) | 240 | WP_014569479.1 | hypothetical protein | - |
| AB9G72_RS07435 (AB9G72_07425) | - | 1634933..1635265 (-) | 333 | WP_015764337.1 | hypothetical protein | - |
| AB9G72_RS07440 (AB9G72_07430) | - | 1635255..1635473 (-) | 219 | WP_015764336.1 | hypothetical protein | - |
| AB9G72_RS07445 (AB9G72_07435) | - | 1635460..1635900 (-) | 441 | WP_015764335.1 | hypothetical protein | - |
| AB9G72_RS07450 (AB9G72_07440) | - | 1635897..1636307 (-) | 411 | WP_015764334.1 | hypothetical protein | - |
| AB9G72_RS07455 (AB9G72_07445) | - | 1636689..1637153 (-) | 465 | WP_015764333.1 | hypothetical protein | - |
| AB9G72_RS07460 (AB9G72_07450) | - | 1637166..1637579 (-) | 414 | WP_015978893.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AB9G72_RS07465 (AB9G72_07455) | - | 1637576..1637830 (-) | 255 | WP_015764332.1 | hypothetical protein | - |
| AB9G72_RS07470 (AB9G72_07460) | - | 1637877..1638326 (-) | 450 | WP_015764331.1 | hypothetical protein | - |
| AB9G72_RS07475 (AB9G72_07465) | - | 1638696..1638887 (-) | 192 | WP_015764330.1 | helix-turn-helix domain-containing protein | - |
| AB9G72_RS07480 (AB9G72_07470) | - | 1638884..1639099 (-) | 216 | WP_015764329.1 | helix-turn-helix transcriptional regulator | - |
| AB9G72_RS07485 (AB9G72_07475) | ssb | 1639408..1639893 (-) | 486 | WP_015764328.1 | single-stranded DNA-binding protein | Machinery gene |
| AB9G72_RS07490 (AB9G72_07480) | - | 1639906..1640862 (-) | 957 | WP_015764327.1 | DnaD domain-containing protein | - |
| AB9G72_RS07495 (AB9G72_07485) | - | 1640878..1641642 (-) | 765 | WP_005711350.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| AB9G72_RS07500 (AB9G72_07490) | - | 1641662..1642537 (-) | 876 | WP_015764325.1 | recombinase RecT | - |
| AB9G72_RS07505 (AB9G72_07495) | - | 1642549..1642719 (-) | 171 | WP_005716154.1 | hypothetical protein | - |
| AB9G72_RS07510 (AB9G72_07500) | - | 1642721..1642939 (-) | 219 | WP_015764324.1 | hypothetical protein | - |
| AB9G72_RS07515 (AB9G72_07505) | - | 1642951..1643079 (-) | 129 | WP_015764323.1 | hypothetical protein | - |
| AB9G72_RS07520 (AB9G72_07510) | - | 1643079..1643435 (-) | 357 | WP_015764322.1 | DUF771 domain-containing protein | - |
| AB9G72_RS07525 (AB9G72_07515) | - | 1643510..1643815 (+) | 306 | WP_015764321.1 | hypothetical protein | - |
| AB9G72_RS07530 (AB9G72_07520) | - | 1643808..1644068 (-) | 261 | WP_015764320.1 | hypothetical protein | - |
| AB9G72_RS07535 (AB9G72_07525) | - | 1644069..1644773 (-) | 705 | WP_015764319.1 | phage regulatory protein/antirepressor Ant | - |
| AB9G72_RS07540 (AB9G72_07530) | - | 1644797..1645039 (-) | 243 | WP_015764318.1 | helix-turn-helix transcriptional regulator | - |
| AB9G72_RS07545 (AB9G72_07535) | - | 1645206..1645871 (+) | 666 | WP_015764317.1 | LexA family transcriptional regulator | - |
| AB9G72_RS07550 (AB9G72_07540) | - | 1645943..1646161 (+) | 219 | WP_005712700.1 | LexA family transcriptional regulator | - |
| AB9G72_RS07555 (AB9G72_07545) | - | 1646252..1647442 (+) | 1191 | WP_064559763.1 | restriction endonuclease subunit S | - |
| AB9G72_RS07560 (AB9G72_07550) | - | 1647677..1647934 (+) | 258 | WP_015764316.1 | hypothetical protein | - |
| AB9G72_RS07565 (AB9G72_07555) | - | 1648032..1648295 (+) | 264 | WP_015764315.1 | hypothetical protein | - |
| AB9G72_RS07570 (AB9G72_07560) | - | 1648403..1649530 (+) | 1128 | WP_015764314.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17695.41 Da Isoelectric Point: 6.9824
>NTDB_id=1033585 AB9G72_RS07485 WP_015764328.1 1639408..1639893(-) (ssb) [Lacticaseibacillus rhamnosus strain NS2301G1]
MLNSVSLTGRLTRDVDLRYTQSGTVTGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTHKGALVGIEGRIQTR
TYDNAQGQKVFVTEVIVDNFALLESRQASQNNPKSQQTANASATATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
MLNSVSLTGRLTRDVDLRYTQSGTVTGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTHKGALVGIEGRIQTR
TYDNAQGQKVFVTEVIVDNFALLESRQASQNNPKSQQTANASATATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=1033585 AB9G72_RS07485 WP_015764328.1 1639408..1639893(-) (ssb) [Lacticaseibacillus rhamnosus strain NS2301G1]
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGTGACAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGGGAAACTGATTTCGTAAATTGCCAGATCT
GGCGCAAGTCGGCTGAGAACTTTGCAAATTTCACTCATAAGGGTGCACTTGTTGGCATCGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGACAGAAAGTGTTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GGCGTCTCAGAACAACCCTAAATCACAGCAAACAGCCAATGCATCAGCAACAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGTGACAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGGGAAACTGATTTCGTAAATTGCCAGATCT
GGCGCAAGTCGGCTGAGAACTTTGCAAATTTCACTCATAAGGGTGCACTTGTTGGCATCGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGACAGAAAGTGTTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GGCGTCTCAGAACAACCCTAAATCACAGCAAACAGCCAATGCATCAGCAACAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.047 |
100 |
0.652 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.674 |
100 |
0.509 |