Detailed information NTG1033379

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB8809_RS06965
• Genome accession: NZ_CP166097
• Coordinates: 1552663..1553508 (+)
• Length: 281 a.a.
• NCBI ID: WP_300993708.1
• Uniprot ID: -
• Organism: Pectobacterium aroidearum strain NCPPB 929
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1547663..1558508

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8809_RS06935 (AB8809_06930)	gspI	1548056..1548421 (+)	366	WP_349855816.1	type II secretion system minor pseudopilin GspI	-
AB8809_RS06940 (AB8809_06935)	gspJ	1548421..1549071 (+)	651	WP_181829033.1	type II secretion system minor pseudopilin GspJ	-
AB8809_RS06945 (AB8809_06940)	gspK	1549068..1550054 (+)	987	WP_015841042.1	type II secretion system minor pseudopilin GspK	-
AB8809_RS06950 (AB8809_06945)	gspL	1550051..1551328 (+)	1278	WP_349855815.1	type II secretion system protein GspL	-
AB8809_RS06955 (AB8809_06950)	gspM	1551325..1551819 (+)	495	WP_182099854.1	type II secretion system protein GspM	-
AB8809_RS06960 (AB8809_06955)	-	1551809..1552555 (+)	747	WP_015841039.1	type II secretion system protein N	-
AB8809_RS06965 (AB8809_06960)	pilD	1552663..1553508 (+)	846	WP_300993708.1	A24 family peptidase	Machinery gene
AB8809_RS06970 (AB8809_06965)	ypdK	1553651..1553725 (-)	75	WP_099606229.1	membrane protein YpdK	-
AB8809_RS06975 (AB8809_06970)	-	1554082..1555107 (-)	1026	WP_349855814.1	LLM class flavin-dependent oxidoreductase	-
AB8809_RS06980 (AB8809_06975)	-	1555582..1556646 (+)	1065	WP_349855813.1	ABC transporter substrate-binding protein	-
AB8809_RS06985 (AB8809_06980)	-	1556643..1557680 (+)	1038	WP_349855812.1	iron ABC transporter permease	-
AB8809_RS06990 (AB8809_06985)	-	1557682..1558452 (+)	771	WP_349855811.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31275.40 Da
• Isoelectric Point: 7.1428

>NTDB_id=1033379 AB8809_RS06965 WP_300993708.1 1552663..1553508(+) (pilD) [Pectobacterium aroidearum strain NCPPB 929]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTDVEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLIAGLLWLPGMALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIINGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=1033379 AB8809_RS06965 WP_300993708.1 1552663..1553508(+) (pilD) [Pectobacterium aroidearum strain NCPPB 929]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCCTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATAGAGCTGCAAACGG
GTGTGACCGATGTCGAGCATGTGACGAGTTACAACCTATGTTGGCCGCCTTCGTCTTGCCCGCACTGTCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATCACGATGCTGGCTTTTCTGATCGCAGGGTTACTGTGGCTGCCCGGCATGGCGTTAT
GCGGGGCGCTGATTCTGCTGTCCTTTCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCGCTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTGGTCGTTACTCTCATCTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCCTGGCTGGC
GATTGGCGGCGTGTTCGGTGTGATAATAAACGGACTCTATCTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.37	96.085	0.484
pilD	Neisseria gonorrhoeae MS11	48.617	90.036	0.438
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	41.971	97.509	0.409
pilD	Acinetobacter nosocomialis M2	41.971	97.509	0.409