Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   AB8P52_RS05065 Genome accession   NZ_CP166088
Coordinates   1030682..1031950 (+) Length   422 a.a.
NCBI ID   WP_059073619.1    Uniprot ID   -
Organism   Companilactobacillus pabuli strain BD-CP     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1025682..1036950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8P52_RS05035 (AB8P52_05035) rpsB 1025897..1026703 (+) 807 WP_059073614.1 30S ribosomal protein S2 -
  AB8P52_RS05040 (AB8P52_05040) tsf 1026774..1027649 (+) 876 WP_059073615.1 translation elongation factor Ts -
  AB8P52_RS05045 (AB8P52_05045) pyrH 1027818..1028552 (+) 735 WP_010019489.1 UMP kinase -
  AB8P52_RS05050 (AB8P52_05050) frr 1028542..1029099 (+) 558 WP_059073616.1 ribosome recycling factor -
  AB8P52_RS05055 (AB8P52_05055) - 1029105..1029848 (+) 744 WP_082666889.1 isoprenyl transferase -
  AB8P52_RS05060 (AB8P52_05060) - 1029867..1030661 (+) 795 WP_059073618.1 phosphatidate cytidylyltransferase -
  AB8P52_RS05065 (AB8P52_05065) eeP 1030682..1031950 (+) 1269 WP_059073619.1 RIP metalloprotease RseP Regulator
  AB8P52_RS05070 (AB8P52_05070) - 1031965..1033674 (+) 1710 WP_059073620.1 proline--tRNA ligase -

Sequence


Protein


Download         Length: 422 a.a.        Molecular weight: 45787.34 Da        Isoelectric Point: 9.5977

>NTDB_id=1033271 AB8P52_RS05065 WP_059073619.1 1030682..1031950(+) (eeP) [Companilactobacillus pabuli strain BD-CP]
MTAIITFIIVFGILVIVHEFGHYYAAKKSGILVREFSVGMGPKIVAYRKNHTTYTLRLLPLGGYVRMAGAQEDDSEIQPG
TMASLVINDDDKVTKIITSSKVYDANAVPVQISKADLVDDLVIEGYENGDETVTKKYSVDHDATIVEEDGTEVQIAPRDV
QLQSVSVWKRMITNFAGPFNNFVLAIVAAIIAAFMMGSVGTGSNQLGSIQKDSVAQKAGLKANDKILSINGKTTASWTDL
SENIQNSPGKKLTMKVQSGKKIETIKVTPKTVKSSGQSYGLIGIMQKTDSSAMAKIKYGFIYSWSTSLTIFHALGKMVSG
GFSINQLSGPVGIYSMTSKVASTGLINIIFFTSMLSMNLGIVNLIPIPALDGGKILLNIVEAIRRKPIPEQYENVITLIG
VGILVLLMIAVTWNDIQRFFIK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1033271 AB8P52_RS05065 WP_059073619.1 1030682..1031950(+) (eeP) [Companilactobacillus pabuli strain BD-CP]
ATGACCGCGATAATTACATTTATAATCGTTTTTGGAATTTTGGTAATTGTTCATGAATTTGGACACTATTACGCTGCAAA
AAAATCAGGAATCTTAGTTCGTGAGTTTTCTGTTGGTATGGGACCGAAAATCGTCGCTTACCGCAAAAATCATACGACCT
ATACTTTGAGACTGCTACCTTTGGGTGGTTATGTCCGCATGGCTGGTGCACAAGAAGATGATTCTGAAATTCAACCAGGA
ACGATGGCATCGTTAGTAATTAATGATGACGATAAAGTAACAAAAATTATAACTTCAAGTAAGGTTTATGATGCAAACGC
GGTTCCAGTTCAAATCTCTAAAGCTGATCTTGTTGATGATTTAGTAATTGAAGGATACGAAAATGGTGATGAAACTGTCA
CTAAGAAGTATTCGGTTGATCATGATGCAACGATTGTTGAAGAGGATGGTACGGAAGTGCAGATTGCACCTCGTGACGTT
CAATTGCAATCAGTTTCTGTCTGGAAGCGAATGATCACGAACTTTGCTGGTCCATTTAACAATTTTGTTTTAGCAATCGT
GGCTGCAATTATTGCTGCCTTTATGATGGGATCAGTTGGGACTGGTTCTAATCAATTGGGTAGCATTCAAAAAGATTCAG
TAGCTCAAAAAGCTGGTCTAAAGGCCAACGATAAAATTTTAAGTATTAACGGGAAGACAACTGCTTCTTGGACTGATTTA
TCAGAGAATATTCAAAATAGTCCTGGTAAAAAATTAACGATGAAAGTTCAATCCGGTAAAAAGATTGAAACAATCAAAGT
AACGCCTAAGACAGTTAAATCTTCAGGTCAAAGTTATGGCTTGATCGGTATCATGCAAAAGACCGATTCTTCTGCCATGG
CTAAAATCAAATATGGTTTCATTTATAGCTGGAGCACTTCTTTAACAATTTTCCACGCTTTAGGAAAGATGGTTTCAGGT
GGGTTTAGCATTAATCAATTATCTGGTCCGGTAGGAATTTATTCGATGACTTCTAAAGTCGCCTCAACTGGTTTGATCAA
CATTATTTTCTTCACATCGATGCTGTCAATGAACTTAGGAATTGTCAATTTGATTCCAATTCCAGCGTTAGATGGTGGAA
AAATCTTGTTAAATATTGTTGAAGCAATTAGAAGAAAACCAATTCCAGAACAATATGAAAATGTGATTACCTTAATTGGG
GTCGGAATCTTAGTTCTATTAATGATTGCCGTAACCTGGAATGATATCCAGCGCTTCTTTATAAAATAG

Domains


Predicted by InterproScan.

(208-257)

(6-407)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.712

100

0.493

  eeP Streptococcus thermophilus LMD-9

48.478

100

0.491


Multiple sequence alignment