Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JNUCC21_RS16615 Genome accession   NZ_CP166019
Coordinates   3268633..3269277 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus sp. JNUCC-21     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3263633..3274277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC21_RS16580 (JNUCC21_16610) - 3264812..3265243 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  JNUCC21_RS16585 (JNUCC21_16615) - 3265243..3265584 (+) 342 WP_043020758.1 Na(+)/H(+) antiporter subunit C -
  JNUCC21_RS16590 (JNUCC21_16620) - 3265577..3267064 (+) 1488 WP_369878339.1 Na+/H+ antiporter subunit D -
  JNUCC21_RS16595 (JNUCC21_16625) - 3267070..3267546 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  JNUCC21_RS16600 (JNUCC21_16630) - 3267546..3267830 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  JNUCC21_RS16605 (JNUCC21_16635) mnhG 3267814..3268188 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  JNUCC21_RS16610 (JNUCC21_16640) - 3268228..3268611 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  JNUCC21_RS16615 (JNUCC21_16645) comA 3268633..3269277 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  JNUCC21_RS16620 (JNUCC21_16650) comP 3269358..3271658 (-) 2301 WP_369878340.1 histidine kinase Regulator
  JNUCC21_RS16625 (JNUCC21_16655) comX 3271672..3271845 (-) 174 WP_012118314.1 competence pheromone ComX -
  JNUCC21_RS16630 (JNUCC21_16660) - 3271814..3272674 (-) 861 WP_157774448.1 polyprenyl synthetase family protein -
  JNUCC21_RS16635 (JNUCC21_16665) degQ 3272882..3273022 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  JNUCC21_RS16640 (JNUCC21_16670) - 3273488..3273829 (+) 342 WP_025285192.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1033142 JNUCC21_RS16615 WP_003152052.1 3268633..3269277(-) (comA) [Bacillus sp. JNUCC-21]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1033142 JNUCC21_RS16615 WP_003152052.1 3268633..3269277(-) (comA) [Bacillus sp. JNUCC-21]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment