Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   JNUCC21_RS01990 Genome accession   NZ_CP166019
Coordinates   393556..393675 (+) Length   39 a.a.
NCBI ID   WP_033575081.1    Uniprot ID   -
Organism   Bacillus sp. JNUCC-21     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 388556..398675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC21_RS01975 (JNUCC21_01975) - 390168..390851 (+) 684 WP_007410267.1 response regulator transcription factor -
  JNUCC21_RS01980 (JNUCC21_01980) - 390838..392271 (+) 1434 WP_161936390.1 HAMP domain-containing sensor histidine kinase -
  JNUCC21_RS01985 (JNUCC21_01985) rapC 392424..393572 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  JNUCC21_RS01990 (JNUCC21_01990) phrC 393556..393675 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  JNUCC21_RS01995 (JNUCC21_01995) - 393823..393933 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  JNUCC21_RS02000 (JNUCC21_02000) - 394013..395377 (-) 1365 WP_059366589.1 aspartate kinase -
  JNUCC21_RS02005 (JNUCC21_02005) ceuB 395791..396744 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  JNUCC21_RS02010 (JNUCC21_02010) - 396734..397681 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  JNUCC21_RS02015 (JNUCC21_02015) - 397675..398433 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=1033093 JNUCC21_RS01990 WP_033575081.1 393556..393675(+) (phrC) [Bacillus sp. JNUCC-21]
MKLKSKWFVICLAAAAIFTVTGAGQTDQADFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1033093 JNUCC21_RS01990 WP_033575081.1 393556..393675(+) (phrC) [Bacillus sp. JNUCC-21]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

72.5

100

0.744

Multiple sequence alignment