Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AB9A07_RS07665 Genome accession   NZ_CP166018
Coordinates   1581340..1581786 (-) Length   148 a.a.
NCBI ID   WP_072433556.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576340..1586786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9A07_RS07635 (AB9A07_07645) gcvPA 1577266..1578612 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  AB9A07_RS07640 (AB9A07_07650) gcvT 1578632..1579723 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  AB9A07_RS07645 (AB9A07_07655) - 1579882..1580406 (-) 525 WP_001015121.1 shikimate kinase -
  AB9A07_RS07650 (AB9A07_07660) - 1580396..1580542 (-) 147 WP_001789879.1 hypothetical protein -
  AB9A07_RS07655 (AB9A07_07665) comGF 1580639..1581136 (-) 498 WP_369947402.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB9A07_RS07660 (AB9A07_07670) comGE 1581054..1581353 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  AB9A07_RS07665 (AB9A07_07675) comGD 1581340..1581786 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB9A07_RS07670 (AB9A07_07680) comGC 1581764..1582075 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  AB9A07_RS07675 (AB9A07_07685) comGB 1582089..1583159 (-) 1071 WP_000776421.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB9A07_RS07680 (AB9A07_07690) comGA 1583131..1584105 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  AB9A07_RS07685 (AB9A07_07695) - 1584157..1584780 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  AB9A07_RS07690 (AB9A07_07700) - 1584777..1585106 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  AB9A07_RS07695 (AB9A07_07705) - 1585106..1586092 (-) 987 WP_000161314.1 ROK family glucokinase -
  AB9A07_RS07700 (AB9A07_07710) - 1586089..1586292 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17150.36 Da        Isoelectric Point: 10.3312

>NTDB_id=1033060 AB9A07_RS07665 WP_072433556.1 1581340..1581786(-) (comGD) [Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15]
MEKQLQIRKLSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1033060 AB9A07_RS07665 WP_072433556.1 1581340..1581786(-) (comGD) [Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15]
ATGGAGAAGCAGTTGCAAATTAGAAAGCTGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGCAGAATTCGTTATGAAAAGCTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment