Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   AB9A07_RS02800 Genome accession   NZ_CP166018
Coordinates   570230..570799 (+) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 565230..575799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9A07_RS02775 (AB9A07_02785) cysE 566443..567090 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  AB9A07_RS02780 (AB9A07_02790) cysS 567074..568474 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  AB9A07_RS02785 (AB9A07_02795) - 568467..568871 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  AB9A07_RS02790 (AB9A07_02800) rlmB 568879..569625 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AB9A07_RS02795 (AB9A07_02805) - 569625..570149 (+) 525 WP_000664738.1 NYN domain-containing protein -
  AB9A07_RS02800 (AB9A07_02810) sigH 570230..570799 (+) 570 WP_000872874.1 sigma-70 family RNA polymerase sigma factor Regulator
  AB9A07_RS02805 (AB9A07_02815) rpmG 570914..571057 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  AB9A07_RS02810 (AB9A07_02820) secE 571113..571295 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  AB9A07_RS02815 (AB9A07_02825) nusG 571308..571856 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  AB9A07_RS02820 (AB9A07_02830) rplK 572037..572459 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  AB9A07_RS02825 (AB9A07_02835) rplA 572667..573359 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  AB9A07_RS02830 (AB9A07_02840) rplJ 573631..574131 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  AB9A07_RS02835 (AB9A07_02845) rplL 574174..574542 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  AB9A07_RS02840 (AB9A07_02850) - 574717..575325 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1033046 AB9A07_RS02800 WP_000872874.1 570230..570799(+) (sigH) [Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1033046 AB9A07_RS02800 WP_000872874.1 570230..570799(+) (sigH) [Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment