Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DYY98_RS11365 Genome accession   NZ_LT992436
Coordinates   2217385..2217981 (+) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus isolate 1549-REV     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2212385..2222981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY98_RS11335 treR 2213314..2214042 (+) 729 WP_000240627.1 trehalose operon repressor -
  DYY98_RS11345 - 2214443..2214558 (+) 116 Protein_2129 hypothetical protein -
  DYY98_RS11350 - 2214681..2215205 (+) 525 WP_001167831.1 GNAT family N-acetyltransferase -
  DYY98_RS11355 dnaX 2215274..2216971 (+) 1698 WP_001109055.1 DNA polymerase III subunit gamma/tau -
  DYY98_RS11360 - 2217061..2217378 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  DYY98_RS11365 recR 2217385..2217981 (+) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  DYY98_RS11370 - 2218186..2218282 (+) 97 Protein_2134 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=1032896 DYY98_RS11365 WP_000559156.1 2217385..2217981(+) (recR) [Staphylococcus aureus isolate 1549-REV]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1032896 DYY98_RS11365 WP_000559156.1 2217385..2217981(+) (recR) [Staphylococcus aureus isolate 1549-REV]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment