Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AB8E34_RS12725 Genome accession   NZ_CP165964
Coordinates   2798531..2798938 (+) Length   135 a.a.
NCBI ID   WP_318644011.1    Uniprot ID   -
Organism   Pseudomonas benzenivorans strain jeju3-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2793531..2803938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E34_RS12695 (AB8E34_12655) - 2793742..2794746 (-) 1005 WP_318644017.1 aspartate carbamoyltransferase catalytic subunit -
  AB8E34_RS12700 (AB8E34_12660) pyrR 2794758..2795264 (-) 507 WP_318644016.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  AB8E34_RS12705 (AB8E34_12665) ruvX 2795294..2795737 (-) 444 WP_318644015.1 Holliday junction resolvase RuvX -
  AB8E34_RS12710 (AB8E34_12670) - 2795737..2796306 (-) 570 WP_318644014.1 YqgE/AlgH family protein -
  AB8E34_RS12715 (AB8E34_12675) - 2796375..2797271 (-) 897 WP_318644013.1 energy transducer TonB -
  AB8E34_RS12720 (AB8E34_12680) gshB 2797328..2798290 (-) 963 WP_369958564.1 glutathione synthase -
  AB8E34_RS12725 (AB8E34_12685) pilG 2798531..2798938 (+) 408 WP_318644011.1 twitching motility response regulator PilG Regulator
  AB8E34_RS12730 (AB8E34_12690) pilH 2798987..2799352 (+) 366 WP_213641699.1 PleD family two-component system response regulator -
  AB8E34_RS12735 (AB8E34_12695) - 2799398..2799934 (+) 537 WP_318644010.1 chemotaxis protein CheW -
  AB8E34_RS12740 (AB8E34_12700) - 2800019..2802067 (+) 2049 WP_318644009.1 methyl-accepting chemotaxis protein -
  AB8E34_RS12745 (AB8E34_12705) - 2802136..2802993 (+) 858 WP_318644008.1 protein-glutamate O-methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14771.14 Da        Isoelectric Point: 7.2438

>NTDB_id=1032598 AB8E34_RS12725 WP_318644011.1 2798531..2798938(+) (pilG) [Pseudomonas benzenivorans strain jeju3-2]
MEQHSEGLRVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADSHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPTFTPVDQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1032598 AB8E34_RS12725 WP_318644011.1 2798531..2798938(+) (pilG) [Pseudomonas benzenivorans strain jeju3-2]
ATGGAACAGCATTCCGAGGGTTTGAGGGTAATGGTGATCGACGATTCGAAAACGATTCGTCGTACCGCGGAAACCCTGCT
GAAGAAGGTGGGTTGCGAGGTGATTACCGCGGTAGACGGCTTCGATGCCCTGGCAAAGATCGCCGACAGCCACCCGAGTA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGTGCCTTCAAA
TCCACGCCGGTGATCATGCTGTCTTCCAAGGACGGTTTGTTCGATAAGGCCAAGGGACGCATCGTCGGCTCCGATCAGTA
CCTGACCAAGCCCTTCAGCAAGGAAGAGCTGCTCGGGGCGATCAAGGCGCACGTGCCGACCTTTACCCCGGTGGATCAGG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.803

94.074

0.704
  vicR Streptococcus mutans UA159

40.476

93.333

0.378

Multiple sequence alignment