Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LSAJ54_RS01690 Genome accession   NZ_LT960790
Coordinates   363859..364455 (+) Length   198 a.a.
NCBI ID   WP_011374047.1    Uniprot ID   Q38YT8
Organism   Latilactobacillus sakei strain J54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 358859..369455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ54_RS01660 (LSAJ54_0352) - 359734..360339 (+) 606 WP_011374042.1 class I SAM-dependent methyltransferase -
  LSAJ54_RS01665 (LSAJ54_0353) - 360412..360756 (+) 345 WP_056947769.1 hypothetical protein -
  LSAJ54_RS01670 (LSAJ54_0354) tadA 360837..361355 (+) 519 WP_099947535.1 tRNA adenosine(34) deaminase TadA -
  LSAJ54_RS01680 (LSAJ54_0355) dnaX 361780..363498 (+) 1719 WP_099947244.1 DNA polymerase III subunit gamma/tau -
  LSAJ54_RS01685 (LSAJ54_0356) - 363525..363833 (+) 309 WP_056947773.1 YbaB/EbfC family nucleoid-associated protein -
  LSAJ54_RS01690 (LSAJ54_0357) recR 363859..364455 (+) 597 WP_011374047.1 recombination mediator RecR Machinery gene
  LSAJ54_RS01695 (LSAJ54_0358) - 364472..364726 (+) 255 WP_011374048.1 YaaL family protein -
  LSAJ54_RS01700 (LSAJ54_0359) tmk 364870..365514 (+) 645 WP_099947245.1 dTMP kinase -
  LSAJ54_RS01705 (LSAJ54_0360) - 365529..365858 (+) 330 WP_011374050.1 cyclic-di-AMP receptor -
  LSAJ54_RS01710 (LSAJ54_0361) holB 365862..366854 (+) 993 WP_025016439.1 DNA polymerase III subunit delta' -
  LSAJ54_RS01715 (LSAJ54_0362) - 366906..367259 (+) 354 WP_011374052.1 DNA replication initiation control protein YabA -
  LSAJ54_RS01720 (LSAJ54_0363) rsmI 367358..368236 (+) 879 WP_099947246.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LSAJ54_RS01725 (LSAJ54_0364) - 368247..368993 (+) 747 WP_016264623.1 acyl-[acyl-carrier-protein] thioesterase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22051.38 Da        Isoelectric Point: 5.1115

>NTDB_id=1032582 LSAJ54_RS01690 WP_011374047.1 363859..364455(+) (recR) [Latilactobacillus sakei strain J54]
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISARRDLHYCSVCGNITDEDPCEICRDTARSQE
MILVVEQPKDVMSMERMNDYHGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGEATAMYISRLI
KPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1032582 LSAJ54_RS01690 WP_011374047.1 363859..364455(+) (recR) [Latilactobacillus sakei strain J54]
ATGCAATATCCAGAACCAATTGCGAAGTTGATCGAAAGTTATATGAAGTTACCAGGCATTGGTAACAAAACAGCAACGCG
ATTAGCTTTTTATACGATTGATATGAATGAAGATGACGTGACTAACTTTGCCAAGAATCTGATTTCAGCACGCCGAGACC
TCCATTATTGTAGTGTCTGTGGCAATATCACTGATGAAGATCCTTGTGAGATTTGTCGGGATACCGCGCGTAGTCAGGAA
ATGATTTTGGTGGTCGAACAACCTAAAGATGTGATGTCGATGGAACGGATGAACGATTATCACGGTCTCTATCACGTCTT
GCACGGGGTGTTGTCACCAATTGAAGGTAAAGGGCCAGACGATATTAATATTGCTAATTTAATTAAACGACTCCAAAAAA
CACCAGCTAAAGAAGTCATCATCGCCACCAATGCAACGCCAGAAGGGGAAGCAACGGCGATGTATATTTCACGGCTAATT
AAGCCGGCCGGGATTAAAGTCACTCGCTTAGCCCATGGTTTAGCGGTCGGGAGCGATATTGAATATGCGGATGAGATGAC
TTTATTAAAAGCTGTCGAGGGTCGTCAAGAAATCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

66.667

100

0.667
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

100

0.48