Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MFPB16_RS01715 Genome accession   NZ_LT960788
Coordinates   382877..383473 (+) Length   198 a.a.
NCBI ID   WP_011374047.1    Uniprot ID   Q38YT8
Organism   Latilactobacillus sakei strain MFPB16A1401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 377877..388473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFPB16_RS01685 (MFPB16_0346) - 378753..379358 (+) 606 WP_016264615.1 class I SAM-dependent methyltransferase -
  MFPB16_RS01690 (MFPB16_0347) - 379431..379775 (+) 345 WP_016264616.1 hypothetical protein -
  MFPB16_RS01695 (MFPB16_0348) tadA 379856..380374 (+) 519 WP_011374044.1 tRNA adenosine(34) deaminase TadA -
  MFPB16_RS01705 (MFPB16_0349) dnaX 380798..382516 (+) 1719 WP_025016437.1 DNA polymerase III subunit gamma/tau -
  MFPB16_RS01710 (MFPB16_0350) - 382543..382851 (+) 309 WP_016264619.1 YbaB/EbfC family nucleoid-associated protein -
  MFPB16_RS01715 (MFPB16_0351) recR 382877..383473 (+) 597 WP_011374047.1 recombination mediator RecR Machinery gene
  MFPB16_RS01720 (MFPB16_0352) - 383490..383744 (+) 255 WP_011374048.1 YaaL family protein -
  MFPB16_RS01725 (MFPB16_0353) tmk 383888..384532 (+) 645 WP_025016438.1 dTMP kinase -
  MFPB16_RS01730 (MFPB16_0354) - 384547..384876 (+) 330 WP_011374050.1 cyclic-di-AMP receptor -
  MFPB16_RS01735 (MFPB16_0355) holB 384880..385872 (+) 993 WP_025016439.1 DNA polymerase III subunit delta' -
  MFPB16_RS01740 (MFPB16_0356) - 385924..386277 (+) 354 WP_011374052.1 DNA replication initiation control protein YabA -
  MFPB16_RS01745 (MFPB16_0357) rsmI 386376..387254 (+) 879 WP_056936483.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MFPB16_RS01750 (MFPB16_0358) - 387265..388011 (+) 747 WP_025016440.1 acyl-[acyl-carrier-protein] thioesterase -
  MFPB16_RS01755 (MFPB16_0359) - 388078..388275 (+) 198 WP_025016441.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22051.38 Da        Isoelectric Point: 5.1115

>NTDB_id=1032500 MFPB16_RS01715 WP_011374047.1 382877..383473(+) (recR) [Latilactobacillus sakei strain MFPB16A1401]
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISARRDLHYCSVCGNITDEDPCEICRDTARSQE
MILVVEQPKDVMSMERMNDYHGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGEATAMYISRLI
KPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1032500 MFPB16_RS01715 WP_011374047.1 382877..383473(+) (recR) [Latilactobacillus sakei strain MFPB16A1401]
ATGCAATATCCAGAACCAATTGCGAAGTTGATCGAAAGTTATATGAAGTTACCAGGCATTGGTAATAAAACAGCAACGCG
ATTAGCTTTTTATACGATTGATATGAATGAAGATGACGTGACTAACTTTGCCAAGAATCTGATTTCAGCACGCCGAGACC
TTCATTATTGTAGTGTCTGTGGCAATATCACTGATGAAGATCCTTGTGAGATTTGTCGGGATACTGCGCGTAGTCAGGAA
ATGATTTTGGTGGTCGAACAACCTAAAGATGTGATGTCGATGGAACGGATGAACGATTATCACGGTCTCTATCACGTCTT
GCACGGGGTGTTGTCACCAATTGAAGGTAAAGGGCCAGACGATATTAATATTGCTAATTTAATTAAACGACTCCAAAAAA
CACCAGCTAAAGAAGTCATCATCGCCACCAATGCAACGCCAGAAGGGGAAGCAACGGCGATGTATATTTCACGGCTAATT
AAGCCGGCCGGGATTAAAGTCACTCGTTTAGCCCATGGTTTAGCCGTCGGAAGCGATATTGAATATGCGGATGAGATGAC
TTTATTAAAAGCTGTCGAGGGCCGTCAAGAAATCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

66.667

100

0.667
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

100

0.48

Multiple sequence alignment