Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QUE23_RS07290 Genome accession   NZ_AP028022
Coordinates   1391399..1391956 (+) Length   185 a.a.
NCBI ID   WP_286348401.1    Uniprot ID   -
Organism   Helicobacter sp. NHP21005 strain NHP21-005     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386399..1396956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE23_RS07270 (NHP21005_14970) - 1386999..1387661 (-) 663 WP_286348398.1 acylphosphatase -
  QUE23_RS07275 - 1387668..1388667 (-) 1000 Protein_1427 agmatine deiminase family protein -
  QUE23_RS07280 (NHP21005_15000) tsaD 1388729..1389748 (+) 1020 WP_286348399.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  QUE23_RS07285 (NHP21005_15010) - 1389803..1391398 (+) 1596 WP_286348400.1 methyl-accepting chemotaxis protein -
  QUE23_RS07290 (NHP21005_15020) comFC 1391399..1391956 (+) 558 WP_286348401.1 phosphoribosyltransferase family protein Machinery gene
  QUE23_RS07295 (NHP21005_15030) - 1391969..1392886 (-) 918 WP_286348402.1 response regulator -
  QUE23_RS07300 (NHP21005_15040) ispF 1392879..1394060 (-) 1182 WP_286348403.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QUE23_RS07305 (NHP21005_15050) thiC 1394227..1395561 (+) 1335 WP_286348404.1 phosphomethylpyrimidine synthase ThiC -
  QUE23_RS07310 (NHP21005_15060) - 1395558..1395926 (-) 369 WP_286348405.1 cytochrome c -
  QUE23_RS07315 (NHP21005_15070) - 1395986..1396834 (+) 849 WP_286348406.1 tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20733.41 Da        Isoelectric Point: 10.1107

>NTDB_id=103239 QUE23_RS07290 WP_286348401.1 1391399..1391956(+) (comFC) [Helicobacter sp. NHP21005 strain NHP21-005]
MRCFSCGVWSFKPLCKHCYTELAPRLQTHRLEHIPVLSFYTYDDIELLLKSKYSLVGSRLLPLLASRVQSLLKPLLQESL
YALPIDDHIKRGYSHTAAIARALCANSPCKPVYNKLRAIKNITYAGQSLEFRKQNPKGFVFKGDSRLAYFLVDDVLTTGT
TLRQAIQTLKAAGAKVAFALVLAKA

Nucleotide


Download         Length: 558 bp        

>NTDB_id=103239 QUE23_RS07290 WP_286348401.1 1391399..1391956(+) (comFC) [Helicobacter sp. NHP21005 strain NHP21-005]
ATGCGCTGTTTTAGCTGCGGGGTGTGGAGTTTTAAACCCCTTTGCAAGCACTGCTACACTGAGCTAGCCCCGCGTCTACA
GACCCACAGACTAGAGCACATCCCCGTTTTGAGCTTTTATACCTATGATGACATTGAGCTGCTGTTAAAGAGCAAATACA
GCCTTGTAGGCAGCCGCCTTTTGCCCCTTTTGGCCTCAAGGGTGCAGAGCTTGTTAAAGCCATTGCTACAAGAGTCGCTT
TATGCCCTGCCCATTGACGATCACATCAAGCGGGGCTATTCCCACACCGCCGCCATCGCCCGCGCGCTCTGCGCTAACAG
CCCTTGCAAACCCGTTTATAACAAATTACGCGCCATAAAAAACATCACCTACGCCGGGCAAAGTTTGGAGTTTCGCAAGC
AAAACCCCAAGGGTTTTGTTTTTAAAGGCGATTCTCGTTTGGCTTACTTTTTGGTGGATGATGTCTTAACTACAGGCACG
ACCCTACGCCAAGCGATTCAAACCCTCAAAGCGGCGGGGGCAAAAGTCGCCTTTGCGCTGGTGCTAGCAAAAGCCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(150-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

48.947

100

0.503
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.417

100

0.368

Multiple sequence alignment