Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | QUE23_RS05650 | Genome accession | NZ_AP028022 |
| Coordinates | 1076512..1077642 (+) | Length | 376 a.a. |
| NCBI ID | WP_286348120.1 | Uniprot ID | - |
| Organism | Helicobacter sp. NHP21005 strain NHP21-005 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1071512..1082642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE23_RS05630 (NHP21005_11580) | - | 1073139..1074155 (-) | 1017 | WP_286348116.1 | ATP-binding protein | - |
| QUE23_RS05635 (NHP21005_11590) | - | 1074152..1074472 (-) | 321 | WP_286348117.1 | hypothetical protein | - |
| QUE23_RS05640 (NHP21005_11600) | - | 1074469..1075512 (-) | 1044 | WP_286348118.1 | flagellar basal body P-ring protein FlgI | - |
| QUE23_RS05645 (NHP21005_11610) | comB9 | 1075637..1076515 (+) | 879 | WP_286348119.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| QUE23_RS05650 (NHP21005_11620) | comB10 | 1076512..1077642 (+) | 1131 | WP_286348120.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| QUE23_RS05655 (NHP21005_11630) | - | 1077687..1078418 (+) | 732 | WP_286348121.1 | (Fe-S)-binding protein | - |
| QUE23_RS05660 (NHP21005_11640) | - | 1078420..1079871 (+) | 1452 | WP_286348122.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| QUE23_RS05665 (NHP21005_11650) | - | 1079864..1080505 (+) | 642 | WP_286348123.1 | lactate utilization protein C | - |
| QUE23_RS05670 (NHP21005_11660) | bcp | 1080515..1080970 (+) | 456 | WP_286348124.1 | thioredoxin-dependent thiol peroxidase | - |
| QUE23_RS05675 (NHP21005_11670) | - | 1080970..1082253 (+) | 1284 | WP_286348125.1 | glycosyltransferase family 4 protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41815.09 Da Isoelectric Point: 6.3171
>NTDB_id=103237 QUE23_RS05650 WP_286348120.1 1076512..1077642(+) (comB10) [Helicobacter sp. NHP21005 strain NHP21-005]
MKPFVKKALIFGGAMAVVFTTSLILHRPKKQEILELQDTNYPLADYLFTPKTPPPSKENSDLTHLQKLLQENAKEIASLK
AQLEQAKKSPPPPPKDTEPKQEIEPPQEQEIEPEPAEPTQEELDMEDALNGRIQGFEEPQEEEIDYGASHFENVKNHDLA
THENRLLRTITADKMIPAFLVTPISSQLAGKVVAQVESDIFANMGRAILIPKGSKVIGYYSNNNKIGEYRLDIVWSRIIT
PQGVNITLTNAKGADVKGYSGLVGQMITHNFQRYGMPLLVSTLSNGLLIGLTSALANKTGKNNLFGDFLLMQLTRQTGLG
LNQIIAQILKDKSNLKPIIIIREGSRVFISPNLDIFFPTPTEGEVMAKFFTHQALH
MKPFVKKALIFGGAMAVVFTTSLILHRPKKQEILELQDTNYPLADYLFTPKTPPPSKENSDLTHLQKLLQENAKEIASLK
AQLEQAKKSPPPPPKDTEPKQEIEPPQEQEIEPEPAEPTQEELDMEDALNGRIQGFEEPQEEEIDYGASHFENVKNHDLA
THENRLLRTITADKMIPAFLVTPISSQLAGKVVAQVESDIFANMGRAILIPKGSKVIGYYSNNNKIGEYRLDIVWSRIIT
PQGVNITLTNAKGADVKGYSGLVGQMITHNFQRYGMPLLVSTLSNGLLIGLTSALANKTGKNNLFGDFLLMQLTRQTGLG
LNQIIAQILKDKSNLKPIIIIREGSRVFISPNLDIFFPTPTEGEVMAKFFTHQALH
Nucleotide
Download Length: 1131 bp
>NTDB_id=103237 QUE23_RS05650 WP_286348120.1 1076512..1077642(+) (comB10) [Helicobacter sp. NHP21005 strain NHP21-005]
ATGAAACCCTTTGTCAAAAAAGCCTTGATTTTTGGGGGTGCTATGGCTGTGGTTTTTACCACTTCTTTAATTTTGCACCG
CCCCAAAAAGCAAGAAATCTTAGAGTTGCAAGACACCAACTACCCCCTAGCCGACTACCTTTTTACCCCCAAAACCCCAC
CCCCATCCAAAGAAAACTCCGATCTAACTCATTTGCAAAAGCTCTTGCAAGAAAACGCTAAAGAAATCGCCAGCCTAAAG
GCACAGTTAGAGCAAGCCAAAAAATCCCCTCCACCACCGCCTAAAGACACAGAGCCAAAGCAAGAAATAGAACCGCCCCA
AGAGCAAGAAATAGAACCCGAGCCTGCTGAACCCACCCAAGAGGAGCTAGACATGGAAGACGCTTTAAACGGGCGTATAC
AGGGCTTTGAAGAACCCCAAGAGGAGGAGATCGACTACGGGGCGAGCCACTTTGAAAATGTAAAAAACCACGATCTAGCC
ACGCATGAAAACCGCCTACTACGCACCATCACCGCCGATAAGATGATCCCCGCTTTTTTAGTAACGCCCATTAGCTCCCA
GCTTGCCGGCAAGGTTGTGGCGCAAGTGGAGAGCGACATTTTCGCCAACATGGGGCGGGCGATTTTAATCCCCAAAGGCT
CAAAAGTCATCGGCTATTACAGCAATAACAATAAAATCGGGGAATACCGCCTAGACATTGTGTGGAGTCGCATCATCACC
CCACAGGGCGTGAACATCACACTCACCAACGCCAAAGGGGCAGATGTCAAGGGTTATAGCGGACTCGTGGGGCAAATGAT
CACACACAACTTCCAACGCTATGGCATGCCCTTGCTCGTGTCGACTCTCTCTAACGGGCTTTTGATCGGCTTGACCTCTG
CCCTTGCCAACAAAACGGGCAAGAACAATCTCTTTGGTGATTTTTTACTCATGCAACTCACCCGCCAAACGGGCTTGGGC
TTAAACCAAATCATCGCCCAAATCTTAAAAGACAAGAGCAACTTAAAGCCTATTATCATCATTAGGGAGGGCTCTAGGGT
GTTTATCTCGCCGAATTTAGACATCTTTTTCCCCACGCCCACAGAGGGCGAAGTTATGGCAAAGTTTTTCACACACCAAG
CATTGCATTAA
ATGAAACCCTTTGTCAAAAAAGCCTTGATTTTTGGGGGTGCTATGGCTGTGGTTTTTACCACTTCTTTAATTTTGCACCG
CCCCAAAAAGCAAGAAATCTTAGAGTTGCAAGACACCAACTACCCCCTAGCCGACTACCTTTTTACCCCCAAAACCCCAC
CCCCATCCAAAGAAAACTCCGATCTAACTCATTTGCAAAAGCTCTTGCAAGAAAACGCTAAAGAAATCGCCAGCCTAAAG
GCACAGTTAGAGCAAGCCAAAAAATCCCCTCCACCACCGCCTAAAGACACAGAGCCAAAGCAAGAAATAGAACCGCCCCA
AGAGCAAGAAATAGAACCCGAGCCTGCTGAACCCACCCAAGAGGAGCTAGACATGGAAGACGCTTTAAACGGGCGTATAC
AGGGCTTTGAAGAACCCCAAGAGGAGGAGATCGACTACGGGGCGAGCCACTTTGAAAATGTAAAAAACCACGATCTAGCC
ACGCATGAAAACCGCCTACTACGCACCATCACCGCCGATAAGATGATCCCCGCTTTTTTAGTAACGCCCATTAGCTCCCA
GCTTGCCGGCAAGGTTGTGGCGCAAGTGGAGAGCGACATTTTCGCCAACATGGGGCGGGCGATTTTAATCCCCAAAGGCT
CAAAAGTCATCGGCTATTACAGCAATAACAATAAAATCGGGGAATACCGCCTAGACATTGTGTGGAGTCGCATCATCACC
CCACAGGGCGTGAACATCACACTCACCAACGCCAAAGGGGCAGATGTCAAGGGTTATAGCGGACTCGTGGGGCAAATGAT
CACACACAACTTCCAACGCTATGGCATGCCCTTGCTCGTGTCGACTCTCTCTAACGGGCTTTTGATCGGCTTGACCTCTG
CCCTTGCCAACAAAACGGGCAAGAACAATCTCTTTGGTGATTTTTTACTCATGCAACTCACCCGCCAAACGGGCTTGGGC
TTAAACCAAATCATCGCCCAAATCTTAAAAGACAAGAGCAACTTAAAGCCTATTATCATCATTAGGGAGGGCTCTAGGGT
GTTTATCTCGCCGAATTTAGACATCTTTTTCCCCACGCCCACAGAGGGCGAAGTTATGGCAAAGTTTTTCACACACCAAG
CATTGCATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
54.545 |
100 |
0.574 |