Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   QUE23_RS05645 Genome accession   NZ_AP028022
Coordinates   1075637..1076515 (+) Length   292 a.a.
NCBI ID   WP_286348119.1    Uniprot ID   -
Organism   Helicobacter sp. NHP21005 strain NHP21-005     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1070637..1081515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE23_RS05620 (NHP21005_11560) - 1070675..1071118 (-) 444 WP_286348114.1 hypothetical protein -
  QUE23_RS05625 (NHP21005_11570) metG 1071118..1073004 (-) 1887 WP_286348115.1 methionine--tRNA ligase -
  QUE23_RS05630 (NHP21005_11580) - 1073139..1074155 (-) 1017 WP_286348116.1 ATP-binding protein -
  QUE23_RS05635 (NHP21005_11590) - 1074152..1074472 (-) 321 WP_286348117.1 hypothetical protein -
  QUE23_RS05640 (NHP21005_11600) - 1074469..1075512 (-) 1044 WP_286348118.1 flagellar basal body P-ring protein FlgI -
  QUE23_RS05645 (NHP21005_11610) comB9 1075637..1076515 (+) 879 WP_286348119.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QUE23_RS05650 (NHP21005_11620) comB10 1076512..1077642 (+) 1131 WP_286348120.1 DNA type IV secretion system protein ComB10 Machinery gene
  QUE23_RS05655 (NHP21005_11630) - 1077687..1078418 (+) 732 WP_286348121.1 (Fe-S)-binding protein -
  QUE23_RS05660 (NHP21005_11640) - 1078420..1079871 (+) 1452 WP_286348122.1 LutB/LldF family L-lactate oxidation iron-sulfur protein -
  QUE23_RS05665 (NHP21005_11650) - 1079864..1080505 (+) 642 WP_286348123.1 lactate utilization protein C -
  QUE23_RS05670 (NHP21005_11660) bcp 1080515..1080970 (+) 456 WP_286348124.1 thioredoxin-dependent thiol peroxidase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33108.34 Da        Isoelectric Point: 9.6635

>NTDB_id=103236 QUE23_RS05645 WP_286348119.1 1075637..1076515(+) (comB9) [Helicobacter sp. NHP21005 strain NHP21-005]
MLPCLCLAQVIENEDSQESPQEHTIQDLHAIQNSFFTKEHGDLDNTLFIDYKLGQMPKLRLRYAMVTTLVFSEPIAEVVL
GDSVGFSTKTLGRNVLLIKPLEVGIDSNLNVIGTSGKIYAFYIFSTTFTSPKNPILNVYVSSQHFFKDKGALNQPLVTLE
NKLQTPTTPTRFLKIGTGGNVLLVDKSQMQRGYRVLGGKRRAWFCLWLCKVAFKAQIKPLDIFNDKHFTYFKFDSQRSGV
KFPVAYKVVDGYDNPINTRIVGDYLIAEDISRKWTLREGKIHACVRKVSKTQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=103236 QUE23_RS05645 WP_286348119.1 1075637..1076515(+) (comB9) [Helicobacter sp. NHP21005 strain NHP21-005]
ATGCTCCCTTGCCTGTGTTTGGCTCAAGTTATAGAAAATGAAGACTCCCAAGAGTCCCCACAAGAGCACACGATCCAAGA
CCTACACGCCATCCAAAACAGCTTTTTTACCAAAGAGCATGGCGACTTAGACAACACGCTTTTCATTGACTATAAACTCG
GGCAAATGCCTAAACTTCGTTTGCGCTACGCCATGGTTACGACCCTCGTTTTTAGCGAGCCGATCGCTGAAGTGGTGCTG
GGCGATAGCGTGGGTTTTAGCACCAAAACCCTAGGGCGCAATGTGCTCTTAATCAAGCCCCTAGAAGTGGGCATCGATTC
AAATTTAAATGTGATTGGGACGAGCGGCAAGATTTACGCCTTTTACATTTTCTCCACGACTTTCACCAGCCCCAAAAACC
CGATTTTAAATGTCTATGTCTCCAGTCAGCACTTTTTTAAAGACAAGGGGGCGTTAAACCAGCCTTTAGTCACGCTTGAA
AACAAACTCCAAACCCCCACCACGCCTACGCGATTTTTGAAAATCGGCACGGGGGGCAATGTGCTGTTAGTGGATAAAAG
CCAAATGCAACGGGGTTATCGGGTGCTTGGGGGCAAAAGGCGGGCGTGGTTTTGTCTGTGGTTATGCAAAGTCGCTTTTA
AGGCGCAAATCAAACCCCTAGATATTTTTAACGACAAGCATTTCACTTACTTTAAGTTTGACAGCCAAAGATCGGGCGTA
AAATTCCCTGTGGCTTACAAAGTGGTCGATGGCTACGACAACCCCATCAACACCCGTATTGTGGGGGATTATTTAATTGC
CGAAGATATTTCACGCAAGTGGACGCTAAGAGAGGGTAAAATCCACGCCTGTGTGCGTAAAGTTAGCAAAACCCAATGA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(49-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

48.495

100

0.497

Multiple sequence alignment