Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CKV94_RS01260 Genome accession   NZ_LT906482
Coordinates   240454..241143 (-) Length   229 a.a.
NCBI ID   WP_003823234.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 235454..246143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS01235 (SAMEA4412678_00246) aroB 235455..236531 (-) 1077 WP_035580151.1 3-dehydroquinate synthase -
  CKV94_RS01240 (SAMEA4412678_00247) - 236531..237085 (-) 555 WP_003823228.1 shikimate kinase -
  CKV94_RS01245 (SAMEA4412678_00248) pilQ 237115..239238 (-) 2124 WP_003823230.1 type IV pilus secretin family protein Machinery gene
  CKV94_RS01250 (SAMEA4412678_00249) pilP 239260..239793 (-) 534 WP_049257862.1 pilus assembly protein PilP Machinery gene
  CKV94_RS01255 (SAMEA4412678_00250) - 239824..240438 (-) 615 WP_003823233.1 type 4a pilus biogenesis protein PilO -
  CKV94_RS01260 (SAMEA4412678_00251) pilN 240454..241143 (-) 690 WP_003823234.1 PilN domain-containing protein Machinery gene
  CKV94_RS01265 (SAMEA4412678_00252) pilM 241145..242245 (-) 1101 WP_064086496.1 type IV pilus biogenesis protein PilM -
  CKV94_RS01270 (SAMEA4412678_00253) - 242377..244743 (+) 2367 WP_003823237.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24602.04 Da        Isoelectric Point: 4.6615

>NTDB_id=1032016 CKV94_RS01260 WP_003823234.1 240454..241143(-) (pilN) [Eikenella corrodens strain NCTC10596]
MIPLIQLNMLPYREEQDKQKKAQFTRLMVFSGLVGVGLLVLTYVSLSGMILNQESRNQQLTDGIAQLDIQIKEVETLEAE
KRDFLARKAKVEELENKRFEAARMIDSLNTVAPEGVYLTGIKAKDVSTYTLSGKATSDSKIADFMRVIPSTNVFGQPSLD
SINKVESVQEFELTVAVSASVPMSSDSANIAPVVMPSESASATGNISASVPNTPVAPASSATATSSPAN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1032016 CKV94_RS01260 WP_003823234.1 240454..241143(-) (pilN) [Eikenella corrodens strain NCTC10596]
ATGATTCCATTAATTCAACTAAATATGCTCCCCTATCGTGAGGAGCAGGATAAACAGAAAAAAGCACAGTTTACCAGGCT
GATGGTGTTCTCTGGTTTGGTTGGTGTTGGTTTGCTGGTGCTGACTTATGTGTCACTTAGTGGCATGATTCTGAACCAAG
AGTCTCGCAATCAGCAATTAACTGATGGTATTGCGCAACTGGATATCCAGATCAAAGAGGTGGAAACCTTGGAGGCTGAA
AAACGGGACTTCTTAGCTCGAAAAGCAAAAGTGGAAGAGCTGGAAAATAAACGTTTTGAAGCAGCTAGGATGATTGACTC
CTTGAATACCGTTGCACCTGAAGGTGTCTATCTAACAGGAATTAAGGCAAAAGATGTCAGCACTTATACTCTGTCTGGTA
AGGCTACTAGTGATAGCAAAATTGCTGATTTTATGCGCGTGATTCCAAGTACCAATGTGTTTGGTCAGCCTTCATTGGAT
AGCATCAATAAAGTAGAGTCGGTACAAGAGTTTGAATTAACTGTAGCTGTTTCTGCCTCTGTGCCGATGAGTAGTGATTC
TGCAAATATTGCTCCTGTTGTAATGCCGTCAGAGTCTGCTTCTGCTACTGGCAATATTTCTGCATCAGTACCCAATACGC
CTGTAGCACCTGCGTCATCTGCTACAGCCACTTCCTCCCCCGCGAATTAA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

42.029

90.393

0.38