Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CKV94_RS01250 Genome accession   NZ_LT906482
Coordinates   239260..239793 (-) Length   177 a.a.
NCBI ID   WP_049257862.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 234260..244793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS11415 - 234387..234554 (-) 168 WP_003823221.1 hypothetical protein -
  CKV94_RS11420 (SAMEA4412678_00245) - 234929..235270 (+) 342 WP_003823223.1 hypothetical protein -
  CKV94_RS01235 (SAMEA4412678_00246) aroB 235455..236531 (-) 1077 WP_035580151.1 3-dehydroquinate synthase -
  CKV94_RS01240 (SAMEA4412678_00247) - 236531..237085 (-) 555 WP_003823228.1 shikimate kinase -
  CKV94_RS01245 (SAMEA4412678_00248) pilQ 237115..239238 (-) 2124 WP_003823230.1 type IV pilus secretin family protein Machinery gene
  CKV94_RS01250 (SAMEA4412678_00249) pilP 239260..239793 (-) 534 WP_049257862.1 pilus assembly protein PilP Machinery gene
  CKV94_RS01255 (SAMEA4412678_00250) - 239824..240438 (-) 615 WP_003823233.1 type 4a pilus biogenesis protein PilO -
  CKV94_RS01260 (SAMEA4412678_00251) pilN 240454..241143 (-) 690 WP_003823234.1 PilN domain-containing protein Machinery gene
  CKV94_RS01265 (SAMEA4412678_00252) pilM 241145..242245 (-) 1101 WP_064086496.1 type IV pilus biogenesis protein PilM -
  CKV94_RS01270 (SAMEA4412678_00253) - 242377..244743 (+) 2367 WP_003823237.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19656.09 Da        Isoelectric Point: 6.9546

>NTDB_id=1032015 CKV94_RS01250 WP_049257862.1 239260..239793(-) (pilP) [Eikenella corrodens strain NCTC10596]
MKKNILWCSAVLLLTACSLTEGDLQQWMDNAQAEARSKVRQPQIPTISKSPEYVDPVINGLNIFDPKRLRVNQQSGINAP
NPDRPKEILENFSLESLRYVGSIKRGGQISAFVEAGGHTYTVRVGNYLGQNYGQITAITPDKLILSEVTEDSYGAWQRRT
AELELNTSDASNQSKSN

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1032015 CKV94_RS01250 WP_049257862.1 239260..239793(-) (pilP) [Eikenella corrodens strain NCTC10596]
ATGAAGAAAAATATACTATGGTGTTCAGCAGTTCTTTTGCTGACAGCCTGTTCTTTGACAGAGGGTGATTTACAGCAGTG
GATGGATAATGCCCAGGCAGAAGCAAGAAGTAAGGTGCGCCAACCACAGATACCGACTATTTCAAAGTCTCCTGAGTATG
TAGACCCTGTAATTAATGGATTGAATATATTTGATCCTAAACGGCTGCGTGTGAACCAACAATCAGGTATTAATGCTCCG
AACCCGGATAGGCCGAAAGAAATTCTGGAGAACTTTAGTTTAGAAAGCTTGCGTTATGTGGGTTCCATTAAACGAGGTGG
TCAGATTTCTGCCTTCGTTGAAGCTGGTGGGCATACCTACACAGTACGCGTTGGCAATTATCTTGGCCAAAACTATGGGC
AAATTACAGCTATTACTCCGGATAAGTTGATCTTATCGGAAGTAACTGAAGACAGCTATGGTGCATGGCAACGTCGAACA
GCGGAGTTGGAGTTAAATACTTCAGACGCTTCTAACCAATCAAAATCTAATTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(23-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

47.399

97.74

0.463

Multiple sequence alignment