Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CKV77_RS01005 Genome accession   NZ_LT906475
Coordinates   219900..220508 (+) Length   202 a.a.
NCBI ID   WP_004919077.1    Uniprot ID   E4T8W1
Organism   Riemerella anatipestifer strain NCTC11014     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 214900..225508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV77_RS10395 (SAMEA4063029_00205) - 215158..216915 (+) 1758 WP_013446731.1 S8 family serine peptidase -
  CKV77_RS10400 (SAMEA4063029_00206) - 216915..219587 (+) 2673 WP_013446732.1 PKD domain-containing protein -
  CKV77_RS01005 (SAMEA4063029_00207) recR 219900..220508 (+) 609 WP_004919077.1 recombination mediator RecR Machinery gene
  CKV77_RS01010 (SAMEA4063029_00208) - 220515..221372 (+) 858 WP_013446733.1 glycosyltransferase family 2 protein -
  CKV77_RS01015 (SAMEA4063029_00209) secG 221411..221773 (-) 363 WP_013446734.1 preprotein translocase subunit SecG -
  CKV77_RS01020 (SAMEA4063029_00210) - 221915..223957 (-) 2043 WP_013446735.1 pitrilysin family protein -
  CKV77_RS01025 (SAMEA4063029_00211) - 223970..225283 (-) 1314 WP_004919072.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22424.76 Da        Isoelectric Point: 4.9891

>NTDB_id=1031892 CKV77_RS01005 WP_004919077.1 219900..220508(+) (recR) [Riemerella anatipestifer strain NCTC11014]
MNFPSKVLEKAVEEISGLPGIGRKSALRLALHLLRQPSSQGLALGDAIQNLVTEIKYCKECHNFSDTDICEICADDSRHA
ELLCVVEDVRDVMAIENTGKFKGKYLVLGGKISPMEGIGPQQLNIETLESKLEIGEIEEVIFALSATMEGDTTVYYLYKK
FKHFDIKFSNIARGISVGDELEYADEVSLGRSILNRIPYKGH

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1031892 CKV77_RS01005 WP_004919077.1 219900..220508(+) (recR) [Riemerella anatipestifer strain NCTC11014]
ATGAATTTTCCAAGTAAGGTTTTAGAAAAAGCAGTAGAAGAAATATCAGGTCTCCCAGGGATAGGCAGAAAGTCGGCTCT
CAGACTAGCGCTTCATTTGCTTAGACAACCGAGTTCACAAGGATTAGCTCTAGGCGATGCTATACAAAATCTAGTTACAG
AGATAAAATATTGTAAAGAATGCCATAACTTTTCGGACACAGATATTTGCGAAATTTGTGCAGATGACAGTAGACACGCT
GAACTCCTATGCGTTGTGGAAGATGTGAGAGATGTAATGGCGATAGAAAACACAGGAAAATTCAAAGGAAAATATTTGGT
TTTAGGAGGAAAAATATCGCCTATGGAAGGTATTGGACCTCAACAATTAAATATAGAAACTTTAGAAAGCAAACTAGAAA
TAGGGGAGATAGAGGAGGTTATTTTTGCACTATCTGCCACTATGGAGGGCGATACCACCGTGTATTATTTGTATAAAAAG
TTTAAGCATTTTGACATTAAATTCTCCAATATTGCGAGAGGGATTTCCGTAGGAGATGAACTAGAGTACGCCGATGAAGT
TTCTTTGGGGAGGTCTATTTTGAACCGAATACCTTATAAAGGTCATTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-171)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4T8W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.837

97.03

0.406
  recR Streptococcus pneumoniae R6

40.306

97.03

0.391
  recR Bacillus subtilis subsp. subtilis str. 168

39.286

97.03

0.381