Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AB7T04_RS17695 Genome accession   NZ_CP165780
Coordinates   3604778..3604897 (+) Length   39 a.a.
NCBI ID   WP_069473622.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-15     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3599778..3609897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB7T04_RS17675 (AB7T04_17645) - 3600128..3600640 (+) 513 Protein_3420 bacteriocin biosynthesis protein AlbG -
  AB7T04_RS17680 (AB7T04_17650) - 3600647..3602023 (-) 1377 WP_071392425.1 YncE family protein -
  AB7T04_RS17685 (AB7T04_17655) - 3602063..3603418 (-) 1356 WP_071392426.1 YncE family protein -
  AB7T04_RS17690 (AB7T04_17660) rapF 3603649..3604794 (+) 1146 WP_079890910.1 tetratricopeptide repeat protein Regulator
  AB7T04_RS17695 (AB7T04_17665) phrF 3604778..3604897 (+) 120 WP_069473622.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AB7T04_RS17700 (AB7T04_17670) - 3605096..3605299 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  AB7T04_RS17705 (AB7T04_17675) - 3605313..3605516 (+) 204 WP_069473623.1 hypothetical protein -
  AB7T04_RS17710 (AB7T04_17680) - 3605551..3605730 (+) 180 Protein_3427 DUF4177 domain-containing protein -
  AB7T04_RS17715 (AB7T04_17685) - 3605923..3606204 (+) 282 WP_014306021.1 hypothetical protein -
  AB7T04_RS17720 (AB7T04_17690) - 3606248..3606760 (+) 513 WP_069473625.1 stage II sporulation protein M -
  AB7T04_RS17725 (AB7T04_17695) - 3607351..3607569 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  AB7T04_RS17730 (AB7T04_17700) speB 3607739..3608611 (-) 873 WP_003151054.1 agmatinase -
  AB7T04_RS17735 (AB7T04_17705) speE 3608671..3609501 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4282.10 Da        Isoelectric Point: 8.0195

>NTDB_id=1031764 AB7T04_RS17695 WP_069473622.1 3604778..3604897(+) (phrF) [Bacillus velezensis strain L-15]
MKLKYKLALTCLAVSTVFVSADIASAPEHQFEIAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1031764 AB7T04_RS17695 WP_069473622.1 3604778..3604897(+) (phrF) [Bacillus velezensis strain L-15]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAATTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436

Multiple sequence alignment