Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB7T04_RS16740 Genome accession   NZ_CP165780
Coordinates   3414654..3416039 (-) Length   461 a.a.
NCBI ID   WP_071392364.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3409654..3421039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB7T04_RS16705 (AB7T04_16675) flgL 3409829..3410746 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  AB7T04_RS16710 (AB7T04_16680) flgK 3410758..3412275 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  AB7T04_RS16715 (AB7T04_16685) - 3412291..3412773 (-) 483 WP_071392362.1 flagellar protein FlgN -
  AB7T04_RS16720 (AB7T04_16690) flgM 3412788..3413054 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB7T04_RS16725 (AB7T04_16695) - 3413124..3413543 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  AB7T04_RS16730 (AB7T04_16700) comFC 3413617..3414306 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  AB7T04_RS16735 (AB7T04_16705) - 3414312..3414596 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  AB7T04_RS16740 (AB7T04_16710) comFA 3414654..3416039 (-) 1386 WP_071392364.1 DEAD/DEAH box helicase Machinery gene
  AB7T04_RS16745 (AB7T04_16715) - 3416147..3416995 (-) 849 WP_230014620.1 DegV family protein -
  AB7T04_RS16750 (AB7T04_16720) degU 3417093..3417782 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB7T04_RS16755 (AB7T04_16725) degS 3417859..3419022 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  AB7T04_RS16760 (AB7T04_16730) - 3419245..3419892 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52522.86 Da        Isoelectric Point: 10.0968

>NTDB_id=1031757 AB7T04_RS16740 WP_071392364.1 3414654..3416039(-) (comFA) [Bacillus velezensis strain L-15]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLKRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1031757 AB7T04_RS16740 WP_071392364.1 3414654..3416039(-) (comFA) [Bacillus velezensis strain L-15]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAATCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGATGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGAAGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment