Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB7T04_RS16730 Genome accession   NZ_CP165780
Coordinates   3413617..3414306 (-) Length   229 a.a.
NCBI ID   WP_199445943.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3408617..3419306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB7T04_RS16695 (AB7T04_16665) fliW 3408708..3409139 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  AB7T04_RS16700 (AB7T04_16670) - 3409169..3409738 (-) 570 WP_003151397.1 DUF6470 family protein -
  AB7T04_RS16705 (AB7T04_16675) flgL 3409829..3410746 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  AB7T04_RS16710 (AB7T04_16680) flgK 3410758..3412275 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  AB7T04_RS16715 (AB7T04_16685) - 3412291..3412773 (-) 483 WP_071392362.1 flagellar protein FlgN -
  AB7T04_RS16720 (AB7T04_16690) flgM 3412788..3413054 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB7T04_RS16725 (AB7T04_16695) - 3413124..3413543 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  AB7T04_RS16730 (AB7T04_16700) comFC 3413617..3414306 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  AB7T04_RS16735 (AB7T04_16705) - 3414312..3414596 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  AB7T04_RS16740 (AB7T04_16710) comFA 3414654..3416039 (-) 1386 WP_071392364.1 DEAD/DEAH box helicase Machinery gene
  AB7T04_RS16745 (AB7T04_16715) - 3416147..3416995 (-) 849 WP_230014620.1 DegV family protein -
  AB7T04_RS16750 (AB7T04_16720) degU 3417093..3417782 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB7T04_RS16755 (AB7T04_16725) degS 3417859..3419022 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25392.13 Da        Isoelectric Point: 8.2217

>NTDB_id=1031756 AB7T04_RS16730 WP_199445943.1 3413617..3414306(-) (comFC) [Bacillus velezensis strain L-15]
MNCLLCDSPISGSLTWRSLFSLTPEQEVCSLCSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAVCFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1031756 AB7T04_RS16730 WP_199445943.1 3413617..3414306(-) (comFC) [Bacillus velezensis strain L-15]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAGGTTCATTGACTTGGAGATCTCTGTTTTCTCTGACGCCCGAGCAAGA
GGTATGCAGCTTATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGTTTGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment