Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB7T04_RS14795 Genome accession   NZ_CP165780
Coordinates   3005710..3006354 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain L-15     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3000710..3011354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB7T04_RS14760 (AB7T04_14740) - 3001895..3002326 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  AB7T04_RS14765 (AB7T04_14745) - 3002326..3002667 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  AB7T04_RS14770 (AB7T04_14750) - 3002660..3004141 (+) 1482 WP_166705774.1 Na+/H+ antiporter subunit D -
  AB7T04_RS14775 (AB7T04_14755) - 3004147..3004623 (+) 477 WP_071392239.1 Na+/H+ antiporter subunit E -
  AB7T04_RS14780 (AB7T04_14760) - 3004623..3004907 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  AB7T04_RS14785 (AB7T04_14765) mnhG 3004891..3005265 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  AB7T04_RS14790 (AB7T04_14770) - 3005305..3005688 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  AB7T04_RS14795 (AB7T04_14775) comA 3005710..3006354 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  AB7T04_RS14800 (AB7T04_14780) comP 3006435..3008726 (-) 2292 WP_039254056.1 histidine kinase Regulator
  AB7T04_RS14805 (AB7T04_14785) comX 3008738..3008902 (-) 165 WP_007613432.1 competence pheromone ComX -
  AB7T04_RS14810 (AB7T04_14790) - 3008902..3009813 (-) 912 WP_031378407.1 polyprenyl synthetase family protein -
  AB7T04_RS14815 (AB7T04_14795) degQ 3009965..3010105 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  AB7T04_RS14820 (AB7T04_14800) - 3010571..3010912 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1031751 AB7T04_RS14795 WP_003152052.1 3005710..3006354(-) (comA) [Bacillus velezensis strain L-15]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1031751 AB7T04_RS14795 WP_003152052.1 3005710..3006354(-) (comA) [Bacillus velezensis strain L-15]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACTCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment