Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   CKV76_RS06355 Genome accession   NZ_LT906440
Coordinates   1067245..1067922 (-) Length   225 a.a.
NCBI ID   WP_003688801.1    Uniprot ID   Q5F8S9
Organism   Neisseria gonorrhoeae strain NCTC13798     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1062245..1072922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV76_RS06340 (SAMEA4076741_01109) hflX 1063831..1065009 (-) 1179 WP_003688795.1 GTPase HflX -
  CKV76_RS06345 (SAMEA4076741_01110) - 1065015..1066295 (-) 1281 WP_003691265.1 CAP domain-containing protein -
  CKV76_RS06350 (SAMEA4076741_01111) - 1066447..1067172 (-) 726 WP_003688798.1 epoxyqueuosine reductase QueH -
  CKV76_RS06355 (SAMEA4076741_01112) ysxA/radC 1067245..1067922 (-) 678 WP_003688801.1 RadC family protein Machinery gene
  CKV76_RS15010 - 1067949..1068071 (+) 123 WP_255294323.1 hypothetical protein -
  CKV76_RS06360 (SAMEA4076741_01113) gshA 1068045..1069394 (-) 1350 WP_003688804.1 glutamate--cysteine ligase -
  CKV76_RS06365 (SAMEA4076741_01114) leuC 1069646..1071055 (+) 1410 WP_003701383.1 3-isopropylmalate dehydratase large subunit -
  CKV76_RS06370 (SAMEA4076741_01115) - 1071150..1071404 (+) 255 WP_003688807.1 hypothetical protein -
  CKV76_RS06375 (SAMEA4076741_01116) leuD 1071466..1072107 (+) 642 WP_010357988.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25108.88 Da        Isoelectric Point: 5.1699

>NTDB_id=1031587 CKV76_RS06355 WP_003688801.1 1067245..1067922(-) (ysxA/radC) [Neisseria gonorrhoeae strain NCTC13798]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILEEELQEEITLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1031587 CKV76_RS06355 WP_003688801.1 1067245..1067922(-) (ysxA/radC) [Neisseria gonorrhoeae strain NCTC13798]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGCGATGC
CGAACTTTTGGCAATCCTTTTACGCGTCGGGACGCGCGGGATGAGCGCGGTCGATTTGGCGCGCTACCTATTGCAGGAGT
TCGGCAGCTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTCGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGAGGAAGAATTGCAGGAAGAAATTACCTTATCCGATCCCGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCCATGTCGCTGGTTGATGTTTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F8S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.719

100

0.382
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378