Detailed information NTG1031540

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB8K36_RS22655
• Genome accession: NZ_CP165753
• Coordinates: 4643677..4644477 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRE187
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4638677..4649477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8K36_RS22620 (AB8K36_22610)	gspH	4638833..4639348 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AB8K36_RS22625 (AB8K36_22615)	gspI	4639345..4639710 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB8K36_RS22630 (AB8K36_22620)	gspJ	4639707..4640303 (+)	597	WP_023279845.1	type II secretion system minor pseudopilin GspJ	-
AB8K36_RS22635 (AB8K36_22625)	gspK	4640300..4641286 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
AB8K36_RS22640 (AB8K36_22630)	gspL	4641273..4642466 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
AB8K36_RS22645 (AB8K36_22635)	-	4642459..4642944 (+)	486	WP_004145896.1	type II secretion system protein M	-
AB8K36_RS22650 (AB8K36_22640)	-	4642934..4643680 (+)	747	WP_009309263.1	type II secretion system protein N	-
AB8K36_RS22655 (AB8K36_22645)	pilD	4643677..4644477 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AB8K36_RS22660 (AB8K36_22650)	hrpB	4644525..4646954 (-)	2430	WP_004222692.1	ATP-dependent helicase HrpB	-
AB8K36_RS22665 (AB8K36_22655)	thpR	4647027..4647563 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AB8K36_RS22670 (AB8K36_22660)	sfsA	4647563..4648279 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB8K36_RS22675 (AB8K36_22665)	dksA	4648442..4648897 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1031540 AB8K36_RS22655 WP_004145898.1 4643677..4644477(+) (pilD) [Klebsiella pneumoniae strain CRE187]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1031540 AB8K36_RS22655 WP_004145898.1 4643677..4644477(+) (pilD) [Klebsiella pneumoniae strain CRE187]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGGCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425