Detailed information NTG1031480

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB8K34_RS07905
• Genome accession: NZ_CP165751
• Coordinates: 1627759..1628559 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRE139
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1622759..1633559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8K34_RS07885 (AB8K34_07875)	dksA	1623339..1623794 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
AB8K34_RS07890 (AB8K34_07880)	sfsA	1623957..1624673 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB8K34_RS07895 (AB8K34_07885)	thpR	1624673..1625209 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AB8K34_RS07900 (AB8K34_07890)	hrpB	1625282..1627711 (+)	2430	WP_012737409.1	ATP-dependent helicase HrpB	-
AB8K34_RS07905 (AB8K34_07895)	pilD	1627759..1628559 (-)	801	WP_004145898.1	prepilin peptidase	Machinery gene
AB8K34_RS07910 (AB8K34_07900)	-	1628556..1629302 (-)	747	WP_012737410.1	type II secretion system protein N	-
AB8K34_RS07915 (AB8K34_07905)	-	1629292..1629777 (-)	486	WP_012737411.1	type II secretion system protein M	-
AB8K34_RS07920 (AB8K34_07910)	gspL	1629770..1630963 (-)	1194	WP_012737412.1	type II secretion system protein GspL	-
AB8K34_RS07925 (AB8K34_07915)	gspK	1630950..1631936 (-)	987	WP_077250502.1	type II secretion system minor pseudopilin GspK	-
AB8K34_RS07930 (AB8K34_07920)	gspJ	1631933..1632529 (-)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
AB8K34_RS07935 (AB8K34_07925)	gspI	1632526..1632891 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB8K34_RS07940 (AB8K34_07930)	gspH	1632888..1633403 (-)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1031480 AB8K34_RS07905 WP_004145898.1 1627759..1628559(-) (pilD) [Klebsiella pneumoniae strain CRE139]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1031480 AB8K34_RS07905 WP_004145898.1 1627759..1628559(-) (pilD) [Klebsiella pneumoniae strain CRE139]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425