Detailed information NTG1031452

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB8K32_RS03850
• Genome accession: NZ_CP165748
• Coordinates: 818785..819585 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRE125
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 813785..824585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8K32_RS03830 (AB8K32_03825)	dksA	814365..814820 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
AB8K32_RS03835 (AB8K32_03830)	sfsA	814983..815699 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB8K32_RS03840 (AB8K32_03835)	thpR	815699..816235 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AB8K32_RS03845 (AB8K32_03840)	hrpB	816308..818737 (+)	2430	WP_032448271.1	ATP-dependent helicase HrpB	-
AB8K32_RS03850 (AB8K32_03845)	pilD	818785..819585 (-)	801	WP_002888947.1	A24 family peptidase	Machinery gene
AB8K32_RS03855 (AB8K32_03850)	-	819582..820328 (-)	747	WP_004145897.1	type II secretion system protein N	-
AB8K32_RS03860 (AB8K32_03855)	-	820318..820803 (-)	486	WP_004151943.1	type II secretion system protein M	-
AB8K32_RS03865 (AB8K32_03860)	gspL	820796..821988 (-)	1193	Protein_736	type II secretion system protein GspL	-
AB8K32_RS03870 (AB8K32_03865)	gspK	821975..822961 (-)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
AB8K32_RS03875 (AB8K32_03870)	gspJ	822958..823554 (-)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
AB8K32_RS03880 (AB8K32_03875)	gspI	823551..823916 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB8K32_RS03885 (AB8K32_03880)	gspH	823913..824428 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1031452 AB8K32_RS03850 WP_002888947.1 818785..819585(-) (pilD) [Klebsiella pneumoniae strain CRE125]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1031452 AB8K32_RS03850 WP_002888947.1 818785..819585(-) (pilD) [Klebsiella pneumoniae strain CRE125]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425