Detailed information NTG1031392

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: VCBK1071_RS13340
• Genome accession: NZ_LT897797
• Coordinates: 2865536..2866210 (-)
• Length: 224 a.a.
• NCBI ID: WP_101411263.1
• Uniprot ID: -
• Organism: Vibrio cholerae isolate Vibrio cholerae str. BC1071
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2860536..2871210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCBK1071_RS13305 (VCBK1071_02615)	-	2860715..2861494 (+)	780	WP_000042990.1	glycosyltransferase family 2 protein	-
VCBK1071_RS13310 (VCBK1071_02616)	-	2861557..2862594 (-)	1038	WP_101411262.1	glycosyltransferase family 9 protein	-
VCBK1071_RS13315 (VCBK1071_02617)	coaD	2862705..2863199 (+)	495	WP_000078885.1	pantetheine-phosphate adenylyltransferase	-
VCBK1071_RS13320 (VCBK1071_02618)	mutM	2863296..2864105 (-)	810	WP_001114646.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
VCBK1071_RS13325 (VCBK1071_02619)	-	2864115..2864597 (-)	483	WP_033931555.1	hypothetical protein	-
VCBK1071_RS13330 (VCBK1071_02620)	rpmG	2864824..2864991 (-)	168	WP_001051801.1	50S ribosomal protein L33	-
VCBK1071_RS13335 (VCBK1071_02621)	rpmB	2865005..2865241 (-)	237	WP_000091952.1	50S ribosomal protein L28	-
VCBK1071_RS13340 (VCBK1071_02622)	radC	2865536..2866210 (-)	675	WP_101411263.1	RadC family protein	Machinery gene
VCBK1071_RS13345 (VCBK1071_02623)	-	2866322..2868001 (-)	1680	WP_032480255.1	methyl-accepting chemotaxis protein	-
VCBK1071_RS13350 (VCBK1071_02624)	coaBC	2868184..2869383 (+)	1200	WP_001190972.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
VCBK1071_RS13355	-	2869449..2869586 (-)	138	WP_001889830.1	hypothetical protein	-
VCBK1071_RS13360 (VCBK1071_02625)	slmA	2869542..2870132 (+)	591	WP_000918350.1	nucleoid occlusion factor SlmA	-
VCBK1071_RS13365 (VCBK1071_02626)	lpxL	2870138..2871085 (+)	948	WP_162922653.1	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25265.07 Da
• Isoelectric Point: 7.5495

>NTDB_id=1031392 VCBK1071_RS13340 WP_101411263.1 2865536..2866210(-) (radC) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MSLKELPTESMPREKLLQRGPQSLSDAELLAIFLRTGTHGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPHQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Nucleotide

• Length: 675 bp

>NTDB_id=1031392 VCBK1071_RS13340 WP_101411263.1 2865536..2866210(-) (radC) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
ATGAGTCTGAAAGAGTTACCCACCGAATCGATGCCGCGCGAAAAATTGCTGCAACGCGGCCCGCAATCATTAAGTGATGC
GGAATTGCTGGCGATTTTCCTACGTACAGGCACGCATGGTATGAATGTGCTCGCCTTGGCGGATCTGCTGCTGCGCGATT
TTGGATCGCTGCGCGCACTGTTCTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTC
CAGTTACAAGCGGTATTGGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCCCTCACCAGTCCGCA
TCAAACCAAACTTTATTTATCGAGCGTGCTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC
ATCGTGTCATTCGCGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCACGAGAAGTGGTTAAGCGG
GCACTGCACCATAATGCTGCTGCAGTGATATTGGCACACAACCACCCATCGGGTGTTGCGGAACCGAGTCAAGCCGATCG
AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGTGTGCTGGATCATTTTGTCGTCGGTGATGGGG
AAGTGGTCTCTTTTGCTGAACGCGGCTGGATATAG

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (104-222)

• UPF0758 N-terminal (UPF0758_N) (4-79)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	53.704	96.429	0.518
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	37.946	100	0.379