Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   AB8X99_RS03885 Genome accession   NZ_CP165726
Coordinates   767211..768482 (+) Length   423 a.a.
NCBI ID   WP_086439858.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain NS2301G2     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 762211..773482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8X99_RS03855 (AB8X99_03855) rpsB 762369..763148 (+) 780 WP_021815938.1 30S ribosomal protein S2 -
  AB8X99_RS03860 (AB8X99_03860) tsf 763239..764117 (+) 879 WP_259027449.1 translation elongation factor Ts -
  AB8X99_RS03865 (AB8X99_03865) pyrH 764199..764924 (+) 726 WP_003681954.1 UMP kinase -
  AB8X99_RS03870 (AB8X99_03870) frr 764924..765484 (+) 561 WP_021815941.1 ribosome recycling factor -
  AB8X99_RS03875 (AB8X99_03875) - 765611..766384 (+) 774 WP_369708161.1 isoprenyl transferase -
  AB8X99_RS03880 (AB8X99_03880) - 766401..767189 (+) 789 WP_252772737.1 phosphatidate cytidylyltransferase -
  AB8X99_RS03885 (AB8X99_03885) eeP 767211..768482 (+) 1272 WP_086439858.1 RIP metalloprotease RseP Regulator
  AB8X99_RS03890 (AB8X99_03890) - 768516..770237 (+) 1722 WP_086439857.1 proline--tRNA ligase -

Sequence


Protein


Download         Length: 423 a.a.        Molecular weight: 46217.61 Da        Isoelectric Point: 6.3997

>NTDB_id=1031374 AB8X99_RS03885 WP_086439858.1 767211..768482(+) (eeP) [Limosilactobacillus fermentum strain NS2301G2]
MIITIITFIIVFGILVLVHEFGHYYFAKRAGILVREFSIGMGPKVWWRRSNGTTYTIRILPLGGYVRLAGADEDEDELRP
GTPVTLQTNEEGKVTLINASEKETLLEGIPLRIVDSDLEDKLIISGYENDDEETVKTYPVDHDATIVERDGTEVRIAPKD
VQFQSASLPARMMTNFAGPMNNFILSLLVFIILGFTLSGIPTNSNVLGGVTKDSVAAKAGLVSGDKITRVATTKVSTWND
ISQAISPNPGKKLAVTYQRDGKTYHTTVTPKTTKQGSQTVGMIGIREEEKFDPVARINYGWRQFITAGTLIFAVLGHMIT
HGFSLNDLGGPVAIYAGTSQATSLGINGILAFLAMLSINLGIVNLIPIPALDGGKLLLNIVEGIIRRPIPEKVEGILNLA
GFALLMILMVLVTYNDIQRYFIH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1031374 AB8X99_RS03885 WP_086439858.1 767211..768482(+) (eeP) [Limosilactobacillus fermentum strain NS2301G2]
TTGATCATCACCATCATTACTTTTATTATCGTCTTCGGAATCCTGGTGCTCGTTCACGAATTCGGCCACTACTACTTTGC
CAAGCGGGCCGGGATTTTGGTGCGCGAGTTTTCGATCGGGATGGGGCCCAAGGTTTGGTGGCGGCGTTCAAACGGGACGA
CCTACACCATCCGGATCCTGCCGCTCGGGGGCTACGTTCGCCTGGCCGGGGCCGATGAAGATGAAGACGAACTCCGTCCC
GGGACGCCGGTGACCTTGCAAACCAATGAGGAAGGCAAGGTGACCCTGATCAACGCCAGCGAAAAGGAAACCCTGTTGGA
GGGGATTCCGCTGCGGATCGTTGACAGCGACCTGGAGGATAAGTTAATCATCTCCGGGTACGAAAATGATGATGAAGAAA
CCGTCAAGACCTACCCGGTTGATCACGACGCGACGATCGTCGAACGGGACGGGACCGAGGTGCGGATCGCCCCCAAGGAC
GTTCAGTTTCAATCGGCCAGCTTACCGGCGCGGATGATGACCAACTTTGCCGGGCCAATGAACAACTTCATCTTGTCCCT
GCTGGTCTTCATCATCCTGGGCTTTACCCTGAGCGGGATCCCCACCAACTCCAACGTCTTGGGCGGGGTAACCAAGGATT
CGGTGGCTGCTAAGGCCGGCCTGGTGAGCGGCGATAAAATTACCAGGGTGGCGACGACCAAGGTCAGCACCTGGAACGAT
ATTTCCCAGGCAATTTCCCCTAATCCGGGGAAGAAGCTCGCCGTTACCTACCAGCGCGATGGCAAGACCTACCACACCAC
CGTGACGCCTAAGACCACCAAACAGGGGAGCCAAACGGTCGGGATGATCGGGATCAGAGAAGAGGAGAAGTTTGATCCGG
TCGCCCGCATTAACTACGGCTGGCGCCAATTTATCACCGCCGGCACCCTGATCTTTGCGGTGCTCGGCCACATGATTACG
CACGGCTTTAGCTTAAACGACCTGGGGGGGCCGGTGGCAATTTACGCCGGCACCTCACAGGCGACCTCGTTAGGGATTAA
CGGCATCCTCGCCTTCTTGGCGATGCTGTCGATTAACCTAGGGATCGTTAACCTGATTCCGATCCCGGCCTTAGACGGGG
GGAAGCTCCTCTTAAACATTGTCGAAGGCATCATTCGCCGGCCAATTCCTGAAAAAGTGGAGGGGATTTTGAATTTGGCT
GGCTTTGCCCTCTTGATGATCCTGATGGTCCTCGTGACCTATAACGACATTCAACGCTACTTTATCCATTAA

Domains


Predicted by InterproScan.

(209-269)

(7-408)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.113

100

0.482

  eeP Streptococcus thermophilus LMD-9

48.113

100

0.482


Multiple sequence alignment