Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   QTG70_RS00180 Genome accession   NZ_CP165642
Coordinates   43633..44967 (-) Length   444 a.a.
NCBI ID   WP_048667859.1    Uniprot ID   C4N134
Organism   Staphylococcus aureus strain BSN04     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38633..49967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTG70_RS00150 (QTG70_00150) - 39144..39365 (-) 222 WP_048667865.1 hypothetical protein -
  QTG70_RS00155 (QTG70_00155) - 39380..39883 (-) 504 WP_031926264.1 DUF1643 domain-containing protein -
  QTG70_RS00160 (QTG70_00160) - 39898..40212 (-) 315 WP_031926265.1 DUF960 family protein -
  QTG70_RS00165 (QTG70_00165) - 40299..40649 (-) 351 WP_048667863.1 SAUGI family uracil-DNA glycosylase inhibitor -
  QTG70_RS00170 (QTG70_00170) - 41214..41948 (-) 735 WP_048667862.1 glucose 1-dehydrogenase -
  QTG70_RS00175 (QTG70_00175) - 42030..43597 (-) 1568 Protein_32 recombinase family protein -
  QTG70_RS00180 (QTG70_00180) ccrA 43633..44967 (-) 1335 WP_048667859.1 cassette chromosome recombinase CcrA Machinery gene
  QTG70_RS00185 (QTG70_00185) - 45155..45784 (-) 630 Protein_34 hypothetical protein -
  QTG70_RS00190 (QTG70_00190) - 45793..46131 (+) 339 Protein_35 recombinase family protein -
  QTG70_RS00195 (QTG70_00195) - 46243..46602 (-) 360 WP_001631039.1 hypothetical protein -
  QTG70_RS00200 (QTG70_00200) - 46809..47135 (+) 327 WP_000391495.1 metalloregulator ArsR/SmtB family transcription factor -
  QTG70_RS00205 (QTG70_00205) - 47465..49390 (+) 1926 WP_000790094.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 51724.58 Da        Isoelectric Point: 9.9765

>NTDB_id=1031207 QTG70_RS00180 WP_048667859.1 43633..44967(-) (ccrA) [Staphylococcus aureus strain BSN04]
MKQAIGYLRQSTTKQQSLTAQKQTIEALAKKYNIQHIIFYSDKQSGRTDNRTGYQQVIERIQQRQCEVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKAKQGKLITTHASFGYHYQ
NGTFIINNDESPTVKAVFNYYLQGYGYKKIAQYLETDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSTSI
YEQAQAIRVNKQVKRTPSANLLKQKIKCPYCGSTLTNMAIRKTNHSLRYYVCPKNMNASRFICDFKGINAENLEKQVLES
CKKFFRDQQLYSKIKHAIEKQLKKQRMHDTSNTLTQEKLIENLAQGKIDVETFREQSQSINLQNKPIQVISDIRIKASLQ
KTIQKSFTLNMLYPYIDEIHITKNKELSGIYLKDEPLNIVNQAV

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=1031207 QTG70_RS00180 WP_048667859.1 43633..44967(-) (ccrA) [Staphylococcus aureus strain BSN04]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCACCGCACAGAAACAAACTATCGAAGC
GCTCGCTAAAAAATACAATATCCAACACATCATCTTTTATAGCGATAAGCAATCAGGCAGAACGGATAATCGAACAGGTT
ATCAACAAGTCATCGAACGCATTCAACAAAGACAATGTGAAGTATTATGTTGTTATCGCTTGAATCGACTACATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAGTATCATGTTCATATTCTAAGTATTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAGAATGGTCTTAAAGAAAAGGCAAAACAAGGTAAACTCATAACAACCCATGCGTCTTTCGGTTATCACTATCAA
AATGGTACTTTCATCATTAATAATGATGAATCACCTACCGTCAAAGCTGTATTCAATTATTATCTTCAAGGCTATGGTTA
TAAGAAAATCGCGCAATACCTAGAAACAGATGATAAATGTATTAATCGTAAACCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGACCAGTATA
TACGAACAAGCTCAAGCAATACGAGTAAATAAACAAGTAAAGCGCACACCTTCTGCTAATTTACTCAAACAAAAGATCAA
ATGTCCTTATTGTGGTTCAACCCTTACCAATATGGCCATTAGAAAAACCAATCATTCATTACGTTATTATGTCTGCCCTA
AAAACATGAATGCATCACGTTTTATATGTGACTTTAAAGGCATAAACGCTGAAAACCTAGAAAAACAGGTCTTAGAATCT
TGCAAAAAATTCTTTCGAGACCAACAGCTCTATTCGAAAATCAAACATGCTATTGAGAAACAGCTCAAAAAACAAAGGAT
GCATGATACTAGTAACACATTAACTCAGGAAAAGCTTATTGAAAATTTAGCACAAGGAAAAATTGATGTAGAAACATTCA
GAGAACAGTCCCAATCAATTAATCTACAGAATAAACCTATACAAGTAATAAGTGATATTCGGATAAAAGCATCACTACAA
AAGACTATACAGAAAAGTTTCACGTTAAACATGCTGTATCCCTATATTGATGAAATTCATATTACTAAAAATAAAGAATT
AAGCGGAATCTATTTAAAAGATGAGCCACTAAACATTGTTAATCAAGCGGTATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(168-248)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(261-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C4N134

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

77.477

100

0.775
  ccrA Staphylococcus aureus N315

72.748

100

0.727

Multiple sequence alignment