Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CS885_RS01315 Genome accession   NZ_LT838273
Coordinates   280236..281756 (-) Length   506 a.a.
NCBI ID   WP_099167469.1    Uniprot ID   -
Organism   Helicobacter pylori isolate HE93/10_v1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 275236..286756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS885_RS01290 - 275804..275998 (-) 195 WP_001114660.1 type II toxin-antitoxin system HicA family toxin -
  CS885_RS01295 - 275991..276209 (-) 219 WP_000906664.1 type II toxin-antitoxin system HicB family antitoxin -
  CS885_RS01300 - 276336..276638 (-) 303 Protein_254 hypothetical protein -
  CS885_RS01305 - 276813..278099 (-) 1287 WP_089086928.1 restriction endonuclease subunit S -
  CS885_RS01310 - 278151..280211 (-) 2061 WP_089086929.1 heavy metal translocating P-type ATPase -
  CS885_RS01315 comM 280236..281756 (-) 1521 WP_099167469.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CS885_RS01320 def 281762..282286 (-) 525 WP_001185851.1 peptide deformylase -
  CS885_RS01325 clpP 282291..282878 (-) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  CS885_RS01330 tig 282899..284254 (-) 1356 WP_099167471.1 trigger factor -
  CS885_RS01335 - 284367..285203 (-) 837 WP_089086930.1 outer membrane protein -
  CS885_RS01340 hpaA 285225..286007 (-) 783 WP_000855942.1 flagellar sheath lipoprotein HpaA -
  CS885_RS01345 moaC 286126..286602 (-) 477 WP_089086931.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57280.28 Da        Isoelectric Point: 8.3899

>NTDB_id=1031087 CS885_RS01315 WP_099167469.1 280236..281756(-) (comM) [Helicobacter pylori isolate HE93/10_v1]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSVFNGKLNEEQIERFCSLNFEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1031087 CS885_RS01315 WP_099167469.1 280236..281756(-) (comM) [Helicobacter pylori isolate HE93/10_v1]
ATGATCAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAGA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAATTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACGCCCCCATGCCAAAA
TCATTGCGCCTAAGGCGAATGAGGAACTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTTGCTAAAGAAGCCG
CTTTGATCGCTAGCGCGGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATTTTACCCCCCTTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCCCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
GAGAGCCAAAACCCGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCACAGTAAGATTGAATACGACAC
CTCTTTTTTATTCGTGGGGGCTCAAAACCCTTGTCTGTGCGGGAATTTACTCAGCGCTACTAAAGCATGCCGTTGCCAAG
ACAGAGAGATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCATCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTGTTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGTTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCTCTTTAAATTTTGAAG
CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGTTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.399

100

0.368
  comM Legionella pneumophila str. Paris

36.779

99.407

0.366
  comM Legionella pneumophila strain ERS1305867

36.779

99.407

0.366