Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB6W34_RS03155 Genome accession   NZ_CP165607
Coordinates   632066..632662 (-) Length   198 a.a.
NCBI ID   WP_003581643.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain MYA5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 627066..637662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W34_RS03125 (AB6W34_03125) - 627135..627530 (+) 396 WP_016363285.1 hypothetical protein -
  AB6W34_RS03130 (AB6W34_03130) - 627924..628517 (+) 594 WP_003581645.1 TMEM175 family protein -
  AB6W34_RS03135 (AB6W34_03135) - 628590..628784 (-) 195 WP_003568474.1 hypothetical protein -
  AB6W34_RS03140 (AB6W34_03140) cydB 628811..629830 (-) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  AB6W34_RS03145 (AB6W34_03145) - 629823..631301 (-) 1479 WP_369526606.1 cytochrome ubiquinol oxidase subunit I -
  AB6W34_RS03150 (AB6W34_03150) rpsR 631743..631979 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  AB6W34_RS03155 (AB6W34_03155) ssb 632066..632662 (-) 597 WP_003581643.1 single-stranded DNA-binding protein Machinery gene
  AB6W34_RS03160 (AB6W34_03160) rpsF 632693..632989 (-) 297 WP_003568460.1 30S ribosomal protein S6 -
  AB6W34_RS03165 (AB6W34_03165) ssb 633117..633548 (-) 432 WP_003568458.1 single-stranded DNA-binding protein -
  AB6W34_RS03170 (AB6W34_03170) deoC 633855..634559 (+) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  AB6W34_RS03175 (AB6W34_03175) gyrA 634664..637285 (-) 2622 WP_003581640.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21154.92 Da        Isoelectric Point: 4.9056

>NTDB_id=1030844 AB6W34_RS03155 WP_003581643.1 632066..632662(-) (ssb) [Lacticaseibacillus paracasei strain MYA5]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNLPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1030844 AB6W34_RS03155 WP_003581643.1 632066..632662(-) (ssb) [Lacticaseibacillus paracasei strain MYA5]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCTGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485

Multiple sequence alignment