Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AB3D65_RS18595 Genome accession   NZ_CP165606
Coordinates   3659316..3659435 (-) Length   39 a.a.
NCBI ID   WP_059367614.1    Uniprot ID   -
Organism   Bacillus velezensis strain BP1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3654316..3664435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS18555 (AB3D65_18555) speE 3654715..3655545 (+) 831 WP_003151052.1 spermidine synthase -
  AB3D65_RS18560 (AB3D65_18560) speB 3655604..3656476 (+) 873 WP_007614448.1 agmatinase -
  AB3D65_RS18565 (AB3D65_18565) - 3656645..3656863 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  AB3D65_RS18570 (AB3D65_18570) - 3657454..3657966 (-) 513 WP_007614439.1 stage II sporulation protein M -
  AB3D65_RS18575 (AB3D65_18575) - 3658010..3658291 (-) 282 WP_007407643.1 hypothetical protein -
  AB3D65_RS18580 (AB3D65_18580) - 3658478..3658663 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  AB3D65_RS18585 (AB3D65_18585) - 3658698..3658901 (-) 204 WP_007407641.1 hypothetical protein -
  AB3D65_RS18590 (AB3D65_18590) - 3658915..3659118 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  AB3D65_RS18595 (AB3D65_18595) phrF 3659316..3659435 (-) 120 WP_059367614.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AB3D65_RS18600 (AB3D65_18600) rapF 3659419..3660564 (-) 1146 WP_079978837.1 tetratricopeptide repeat protein Regulator
  AB3D65_RS18605 (AB3D65_18605) - 3660795..3662150 (+) 1356 WP_369547491.1 YncE family protein -
  AB3D65_RS18610 (AB3D65_18610) - 3662190..3663566 (+) 1377 WP_369547492.1 YncE family protein -
  AB3D65_RS18615 (AB3D65_18615) - 3663573..3664085 (-) 513 Protein_3552 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.12 Da        Isoelectric Point: 9.2027

>NTDB_id=1030832 AB3D65_RS18595 WP_059367614.1 3659316..3659435(-) (phrF) [Bacillus velezensis strain BP1]
MKLKYKLALTCLAISTVFVSADIASAPQHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1030832 AB3D65_RS18595 WP_059367614.1 3659316..3659435(-) (phrF) [Bacillus velezensis strain BP1]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GCAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment