Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB6L51_RS15055 Genome accession   NZ_CP163562
Coordinates   2879194..2879835 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BC255T1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2874194..2884835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS15020 (AB6L51_15015) - 2875322..2875753 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  AB6L51_RS15025 (AB6L51_15020) - 2875753..2876094 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  AB6L51_RS15030 (AB6L51_15025) - 2876087..2877565 (+) 1479 WP_249670092.1 Na+/H+ antiporter subunit D -
  AB6L51_RS15035 (AB6L51_15030) - 2877572..2878051 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  AB6L51_RS15040 (AB6L51_15035) - 2878051..2878332 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  AB6L51_RS15045 (AB6L51_15040) mnhG 2878316..2878690 (+) 375 WP_008345852.1 monovalent cation/H(+) antiporter subunit G -
  AB6L51_RS15050 (AB6L51_15045) - 2878781..2879170 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  AB6L51_RS15055 (AB6L51_15050) comA 2879194..2879835 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  AB6L51_RS15060 (AB6L51_15055) comP 2879916..2882228 (-) 2313 WP_407974480.1 ATP-binding protein Regulator
  AB6L51_RS15065 (AB6L51_15060) comX 2882269..2882439 (-) 171 WP_074041927.1 competence pheromone ComX -
  AB6L51_RS15070 (AB6L51_15065) - 2882436..2883350 (-) 915 WP_060832601.1 polyprenyl synthetase family protein -
  AB6L51_RS15075 (AB6L51_15070) degQ 2883502..2883642 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AB6L51_RS15080 (AB6L51_15075) - 2884148..2884501 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=1030686 AB6L51_RS15055 WP_007500477.1 2879194..2879835(-) (comA) [Bacillus altitudinis strain BC255T1]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1030686 AB6L51_RS15055 WP_007500477.1 2879194..2879835(-) (comA) [Bacillus altitudinis strain BC255T1]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCACAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment