Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB6N81_RS11880 | Genome accession | NZ_CP163559 |
| Coordinates | 2423812..2424207 (+) | Length | 131 a.a. |
| NCBI ID | WP_002447777.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain B273 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2418812..2429207
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB6N81_RS11855 (AB6N81_11815) | - | 2420231..2420635 (+) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
| AB6N81_RS11860 (AB6N81_11820) | - | 2420784..2421017 (+) | 234 | WP_002495678.1 | DUF1146 family protein | - |
| AB6N81_RS11865 (AB6N81_11825) | murA | 2421127..2422392 (+) | 1266 | WP_002458708.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| AB6N81_RS11870 (AB6N81_11830) | fabZ | 2422426..2422863 (+) | 438 | WP_002458707.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| AB6N81_RS11875 (AB6N81_11835) | - | 2423181..2423621 (-) | 441 | WP_002458706.1 | YwpF-like family protein | - |
| AB6N81_RS11880 (AB6N81_11840) | ssb | 2423812..2424207 (+) | 396 | WP_002447777.1 | single-stranded DNA-binding protein | Machinery gene |
| AB6N81_RS11885 (AB6N81_11845) | - | 2424596..2425255 (+) | 660 | WP_369352028.1 | transglycosylase family protein | - |
| AB6N81_RS11890 (AB6N81_11850) | tenA | 2425539..2426228 (+) | 690 | WP_002447775.1 | thiaminase II | - |
| AB6N81_RS11895 (AB6N81_11855) | thiD | 2426221..2427042 (+) | 822 | WP_002458705.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| AB6N81_RS11900 (AB6N81_11860) | thiM | 2427035..2427823 (+) | 789 | WP_162160249.1 | hydroxyethylthiazole kinase | - |
| AB6N81_RS11905 (AB6N81_11865) | thiE | 2427829..2428467 (+) | 639 | WP_002458704.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15144.99 Da Isoelectric Point: 5.2661
>NTDB_id=1030588 AB6N81_RS11880 WP_002447777.1 2423812..2424207(+) (ssb) [Staphylococcus epidermidis strain B273]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=1030588 AB6N81_RS11880 WP_002447777.1 2423812..2424207(+) (ssb) [Staphylococcus epidermidis strain B273]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |